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si:dkey-240h12.4 si:dkey-240h12.4 [ Danio rerio (zebrafish) ]

Gene ID: 555536, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-240h12.4provided by ZNC
Official Full Name
si:dkey-240h12.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-406
See related
Ensembl:ENSDARG00000034210 AllianceGenome:ZFIN:ZDB-GENE-070705-406
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable myosin light chain kinase activity. Predicted to act upstream of or within protein phosphorylation. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (11167055..11208807, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (11249420..11290764, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene microseminoprotein, prostate associated 2 Neighboring gene tropomyosin 3 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 1a Neighboring gene uncharacterized LOC103909207 Neighboring gene si:ch73-109i22.2 Neighboring gene signal sequence receptor, beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables myosin light chain kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
death-associated protein kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    11167055..11208807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_678062.8 → XP_683154.4  death-associated protein kinase 2

    See identical proteins and their annotated locations for XP_683154.4

    UniProtKB/TrEMBL
    A0A8M9PBF2, F1QN42
    Related
    ENSDARP00000044425.7, ENSDART00000044426.8
    Conserved Domains (1) summary
    cl21453
    Location:7 → 275
    PKc_like; Protein Kinases, catalytic domain

  2. XM_021468288.1 → XP_021323963.1  death-associated protein kinase 2

    UniProtKB/TrEMBL
    A0A8M9PBF2, F1QN42
    Conserved Domains (1) summary
    cl21453
    Location:7 → 275
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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