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clasrp CLK4-associating serine/arginine rich protein [ Danio rerio (zebrafish) ]

Gene ID: 555304, updated on 25-Aug-2020

Summary

Official Symbol
clasrpprovided by ZNC
Official Full Name
CLK4-associating serine/arginine rich proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-837
See related
Ensembl:ENSDARG00000061742
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sfr; zgc:153344; si:dkey-7l12.4
Orthologs

Genomic context

See clasrp in Genome Data Viewer
Location:
chromosome: 18
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (36601450..36631296)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (36620455..36650286)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (34941278..34971132)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438122 Neighboring gene sialic acid acetylesterase Neighboring gene zinc finger protein 296 Neighboring gene calpain 12

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
CLK4-associating serine/arginine rich protein
Names
sfrs16

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044329.1NP_001037794.1  CLK4-associating serine/arginine rich protein

    Status: PROVISIONAL

    Source sequence(s)
    BX927074
    UniProtKB/TrEMBL
    Q1LUX7
    Related
    ENSDARP00000111822.2, ENSDART00000127825.4
    Conserved Domains (1) summary
    pfam09750
    Location:41170
    DRY_EERY; Alternative splicing regulator

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    36601450..36631296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017351925.2XP_017207414.1  CLK4-associating serine/arginine rich protein isoform X1

  2. XM_005173653.4XP_005173710.1  CLK4-associating serine/arginine rich protein isoform X2

    Conserved Domains (2) summary
    pfam05398
    Location:347401
    PufQ; PufQ cytochrome subunit
    pfam09750
    Location:41170
    DRY_EERY; Alternative splicing regulator

RNA

  1. XR_225163.4 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395039.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    101508..135987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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