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SVOP SV2 related protein [ Homo sapiens (human) ]

Gene ID: 55530, updated on 11-Jun-2021

Summary

Official Symbol
SVOPprovided by HGNC
Official Full Name
SV2 related proteinprovided by HGNC
Primary source
HGNC:HGNC:25417
See related
Ensembl:ENSG00000166111 MIM:611699
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 14.1) and adrenal (RPKM 0.9) See more
Orthologs
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Genomic context

See SVOP in Genome Data Viewer
Location:
12q24.11
Exon count:
16
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (108907741..109021068, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (109301517..109458873, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene slingshot protein phosphatase 1 Neighboring gene microRNA 619 Neighboring gene D-amino acid oxidase Neighboring gene RNA, U6 small nuclear 361, pseudogene Neighboring gene uncharacterized LOC105378256 Neighboring gene ubiquitin specific peptidase 30 Neighboring gene USP30 antisense RNA 1 Neighboring gene RNA, 5S ribosomal pseudogene 372

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp761H039

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synaptic vesicle ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
synaptic vesicle 2-related protein
Names
SV2 related protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018711.5NP_061181.1  synaptic vesicle 2-related protein

    See identical proteins and their annotated locations for NP_061181.1

    Status: VALIDATED

    Source sequence(s)
    AC087893, BC033587, BC037811, BC094722, DA793417, DB297770
    Consensus CDS
    CCDS73520.1
    UniProtKB/Swiss-Prot
    Q8N4V2
    Related
    ENSP00000479104.1, ENST00000610966.5
    Conserved Domains (1) summary
    cd17441
    Location:87509
    MFS_SVOP; Synaptic vesicle 2-related protein (SVOP) of the Major Facilitator Superfamily

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    108907741..109021068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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