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foxp2 forkhead box P2 [ Danio rerio (zebrafish) ]

Gene ID: 555242, updated on 6-May-2021

Summary

Official Symbol
foxp2provided by ZNC
Official Full Name
forkhead box P2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041203-2
See related
Ensembl:ENSDARG00000005453
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See foxp2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (6423352..6639537, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (6414782..6630967, complement)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (5812238..6028423, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108183538 Neighboring gene MyoD family inhibitor domain containing Neighboring gene si:ch211-262n1.5 Neighboring gene protein phosphatase 1, regulatory subunit 3Aa Neighboring gene G protein-coupled receptor 85 Neighboring gene transmembrane protein 168a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030082.2NP_001025253.1  forkhead box protein P2

    See identical proteins and their annotated locations for NP_001025253.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ061052
    UniProtKB/TrEMBL
    Q4JNX5
    Related
    ENSDARP00000060860.4, ENSDART00000060861.6
    Conserved Domains (2) summary
    cd00059
    Location:470542
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:305372
    FOXP-CC; FOXP coiled-coil domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    6423352..6639537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394547.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    2448..104351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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