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rorab RAR-related orphan receptor A, paralog b [ Danio rerio (zebrafish) ]

Gene ID: 554722, updated on 3-Oct-2019

Summary

Official Symbol
rorabprovided by ZNC
Official Full Name
RAR-related orphan receptor A, paralog bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-855
See related
Ensembl:ENSDARG00000001910
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
Rora; zgc:55954; wu:fq24g04

Genomic context

See rorab in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (29538633..29625728, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (29267480..29355375, complement)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (30875142..30962375, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene intelectin 4 Neighboring gene annexin A2b Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene serine/threonine-protein kinase pim-2-like

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • MGC55954, MGC174539

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor ROR-alpha B; RAR-related orphan receptor A, paralog b
Names
NR1F1-A
RORalpha-A
retinoid-related orphan receptor alpha 1
retinoid-related orphan receptor-alpha B
rora1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201067.1NP_957361.1  nuclear receptor ROR-alpha B

    See identical proteins and their annotated locations for NP_957361.1

    Status: PROVISIONAL

    Source sequence(s)
    BC051158
    UniProtKB/TrEMBL
    Q7ZU39
    Related
    ENSDARP00000015111.9, ENSDART00000019140.12
    Conserved Domains (2) summary
    cd06939
    Location:222462
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:10104
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    29538633..29625728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477531.1XP_021333206.1  RAR-related orphan receptor A, paralog b isoform X2

    Conserved Domains (2) summary
    cd06939
    Location:264504
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:52146
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
  2. XM_009303216.3XP_009301491.1  RAR-related orphan receptor A, paralog b isoform X1

    UniProtKB/TrEMBL
    A0A1D5NSP3
    Related
    ENSDARP00000142860.1, ENSDART00000173723.2
    Conserved Domains (2) summary
    cd06939
    Location:274514
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:62156
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
  3. XM_017356860.2XP_017212349.1  RAR-related orphan receptor A, paralog b isoform X3

RNA

  1. XR_002459138.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394694.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    412226..446108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395266.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    219211..252146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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