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LINC00862 long intergenic non-protein coding RNA 862 [ Homo sapiens (human) ]

Gene ID: 554279, updated on 5-Jan-2022

Summary

Official Symbol
LINC00862provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 862provided by HGNC
Primary source
HGNC:HGNC:21901
See related
Ensembl:ENSG00000203721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMIM16; C1orf98
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00862 in Genome Data Viewer
Location:
1q32.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (200342544..200373792, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (200311672..200342920, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 5 group A member 2 Neighboring gene collagen type XXII alpha 1 chain pseudogene Neighboring gene CCNQ pseudogene 1 Neighboring gene Sharpr-MPRA regulatory regions 7059 and 708 Neighboring gene zinc finger protein 281 Neighboring gene uncharacterized LOC107985459

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • small integral membrane protein 16

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040064.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097065, BC040731
    Related
    ENST00000367355.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    200342544..200373792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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