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STRCP1 stereocilin pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 554225, updated on 5-Jan-2022

Summary

Official Symbol
STRCP1provided by HGNC
Official Full Name
stereocilin pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33915
See related
Ensembl:ENSG00000166763
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
STRCP
Summary
Predicted to be involved in cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in cell surface; kinocilium; and stereocilium tip. [provided by Alliance of Genome Resources, Nov 2021]
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Genomic context

See STRCP1 in Genome Data Viewer
Location:
15q15.3
Exon count:
28
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (43699418..43718260, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (43991616..44010458, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene PPIP5K1P1-CATSPER2 readthrough Neighboring gene diphosphoinositol pentakisphosphate kinase 1 pseudogene 1 Neighboring gene creatine kinase, mitochondrial 1A Neighboring gene RNA, U6 small nuclear 353, pseudogene Neighboring gene RNA, U6 small nuclear 354, pseudogene Neighboring gene cation channel sperm associated 2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell-matrix adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in kinocilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in stereocilium tip IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146078.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011330, AC018512
    Related
    ENST00000675830.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    43699418..43718260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_029359.1: Suppressed sequence

    Description
    NG_029359.1: This RefSeq was removed because it is now thought that this locus is transcribed.
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