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JPX JPX transcript, XIST activator [ Homo sapiens (human) ]

Gene ID: 554203, updated on 29-Mar-2020

Summary

Official Symbol
JPXprovided by HGNC
Official Full Name
JPX transcript, XIST activatorprovided by HGNC
Primary source
HGNC:HGNC:37191
See related
Ensembl:ENSG00000225470 MIM:300832
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ENOX; DCBALD06; LINC00183; NCRNA00183
Summary
JPX is a nonprotein-coding RNA transcribed from a gene within the X-inactivation center (XIC; MIM 314670) that appears to participate in X chromosome inactivation (Tian et al., 2010 [PubMed 21029862]).[supplied by OMIM, Feb 2011]
Expression
Ubiquitous expression in fat (RPKM 1.9), thyroid (RPKM 1.8) and 25 other tissues See more
Orthologs

Genomic context

See JPX in Genome Data Viewer
Location:
Xq13.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (73944324..74070384)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (73164159..73290219)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene TSIX transcript, XIST antisense RNA Neighboring gene X inactive specific transcript Neighboring gene FXYD domain containing ion transport regulator 6 pseudogene 3 Neighboring gene ribosomal protein SA pseudogene 14 Neighboring gene FTX transcript, XIST regulator Neighboring gene SHISA5 pseudogene 2 Neighboring gene ubiquitin like with PHD and ring finger domains 2 pseudogene 1 Neighboring gene DEAD-box helicase 3 pseudogene 1 Neighboring gene DEAD-box helicase 3 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • JPX transcript, XIST activator (non-protein coding)
  • expressed neighbor of XIST
  • just proximal to XIST

Gene Ontology Provided by GOA

Process Evidence Code Pubs
positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024582.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139400, AL627389, BC071776, BP871721
    Related
    ENST00000602772.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    73944324..74070384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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