U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

mrpl4 mitochondrial ribosomal protein L4 [ Danio rerio (zebrafish) ]

Gene ID: 553771, updated on 2-Nov-2024

Summary

Official Symbol
mrpl4provided by ZNC
Official Full Name
mitochondrial ribosomal protein L4provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-388
See related
Ensembl:ENSDARG00000058824 AllianceGenome:ZFIN:ZDB-GENE-050522-388
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgmrpl4; zgc:110034; si:dkey-23f9.3
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL4 (mitochondrial ribosomal protein L4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See mrpl4 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (11319141..11331052, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (11335520..11347461, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase 4A1 Neighboring gene collagen, type IX, alpha 1a Neighboring gene HYLS1 centriolar and ciliogenesis associated Neighboring gene zgc:77929 Neighboring gene uncharacterized LOC137496640

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC110034

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
large ribosomal subunit protein uL4m
Names
39S ribosomal protein L4, mitochondrial
L4mt
MRP-L4
NP_001018572.1
XP_005155804.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020736.1NP_001018572.1  large ribosomal subunit protein uL4m

    See identical proteins and their annotated locations for NP_001018572.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095145
    UniProtKB/Swiss-Prot
    Q503X2
    Related
    ENSDARP00000076204.4, ENSDART00000081765.6
    Conserved Domains (1) summary
    pfam00573
    Location:89280
    Ribosomal_L4; Ribosomal protein L4/L1 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    11319141..11331052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155747.4XP_005155804.1  large ribosomal subunit protein uL4m isoform X1

    UniProtKB/TrEMBL
    A0A0R4ILL2, A0A8M2B2H8
    Related
    ENSDARP00000134997.1, ENSDART00000160247.2
    Conserved Domains (1) summary
    pfam00573
    Location:88279
    Ribosomal_L4; Ribosomal protein L4/L1 family