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tefb TEF transcription factor, PAR bZIP family member b [ Danio rerio (zebrafish) ]

Gene ID: 553686, updated on 3-Oct-2019

Summary

Official Symbol
tefbprovided by ZNC
Official Full Name
TEF transcription factor, PAR bZIP family member bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-224
See related
Ensembl:ENSDARG00000098103
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
TEF2; zgc:112180

Genomic context

See tefb in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (5052822..5067626, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (5142981..5157785, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (5651464..5669397)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene protein Tob2 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide H Neighboring gene uncharacterized LOC101886663 Neighboring gene myosin, heavy chain 9b, non-muscle

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Clone Names

  • MGC112180

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cellular response to light stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TEF transcription factor, PAR bZIP family member b
Names
thyrotroph embryonic factor 2
thyrotroph embryonic factor b
thyrotrophic embryonic factor b
ztef2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020661.1NP_001018497.1  TEF transcription factor, PAR bZIP family member b

    See identical proteins and their annotated locations for NP_001018497.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095684
    UniProtKB/TrEMBL
    Q502I5
    Related
    ENSDARP00000131779.1, ENSDART00000169609.2
    Conserved Domains (1) summary
    cd14695
    Location:213265
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    5052822..5067626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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