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VNN3P vanin 3, pseudogene [ Homo sapiens (human) ]

Gene ID: 55350, updated on 24-Jul-2021

Summary

Official Symbol
VNN3Pprovided by HGNC
Official Full Name
vanin 3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:16431
See related
MIM:606592
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
VNN3; HSA238982
Summary
This gene is the central gene in a cluster of three vanin genes on chromosome 6q23-q24. Extensive alternative splicing has been described; the two most common variants are represented as RefSeqs. [provided by RefSeq, Apr 2014]
Expression
Biased expression in bone marrow (RPKM 15.1), liver (RPKM 10.5) and 5 other tissues See more
Orthologs
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Genomic context

See VNN3P in Genome Data Viewer
Location:
6q23.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (132722787..132734765, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (133043926..133055904, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene HLF pseudogene 1 Neighboring gene vanin 1 Neighboring gene cyclin G1 pseudogene 1 Neighboring gene vanin 2 Neighboring gene RNA binding motif protein 11 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Homology

Other Names

  • pantetheinase pseudogene
  • pantetheinase-associated gene expressed in leukocytes (PAGEL)-alpha
  • vanin 1 pseudogene
  • vascular non-inflammatory molecule 3

Clone Names

  • MGC171203

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pantetheine hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables pantetheine hydrolase activity NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in pantothenate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region TAS
Traceable Author Statement
more info
 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    132722787..132734765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001368156.1NP_001355085.1  

  2. NM_001368152.1NP_001355081.1  

  3. NM_001368155.1NP_001355084.1  

  4. NM_001291703.2NP_001278632.1  

    UniProtKB/Swiss-Prot
    Q9NY84
    UniProtKB/TrEMBL
    B2RBK8
    Conserved Domains (1) summary
    cl11424
    Location:172
    nitrilase; Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes
  5. NM_001368154.1NP_001355083.1  

  6. NM_001368151.1NP_001355080.1  

  7. NM_001291702.2NP_001278631.1  

    UniProtKB/TrEMBL
    B2RBK8
    Conserved Domains (1) summary
    cl11424
    Location:172
    nitrilase; Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes
  8. NM_001368150.1NP_001355079.1  

  9. NM_001368149.1NP_001355078.1  

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001291702.2: Suppressed sequence

    Description
    NM_001291702.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  2. NM_001291703.2: Suppressed sequence

    Description
    NM_001291703.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  3. NM_001368149.1: Suppressed sequence

    Description
    NM_001368149.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  4. NM_001368150.1: Suppressed sequence

    Description
    NM_001368150.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  5. NM_001368151.1: Suppressed sequence

    Description
    NM_001368151.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  6. NM_001368152.1: Suppressed sequence

    Description
    NM_001368152.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  7. NM_001368154.1: Suppressed sequence

    Description
    NM_001368154.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  8. NM_001368155.1: Suppressed sequence

    Description
    NM_001368155.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  9. NM_001368156.1: Suppressed sequence

    Description
    NM_001368156.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  10. NM_018399.3: Suppressed sequence

    Description
    NM_018399.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  11. NM_078625.2: Suppressed sequence

    Description
    NM_078625.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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