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TCP11L1 t-complex 11 like 1 [ Homo sapiens (human) ]

Gene ID: 55346, updated on 4-Jul-2021

Summary

Official Symbol
TCP11L1provided by HGNC
Official Full Name
t-complex 11 like 1provided by HGNC
Primary source
HGNC:HGNC:25655
See related
Ensembl:ENSG00000176148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ85M6.3
Expression
Ubiquitous expression in brain (RPKM 7.3), small intestine (RPKM 3.3) and 25 other tissues See more
Orthologs
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Genomic context

See TCP11L1 in Genome Data Viewer
Location:
11p13
Exon count:
12
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (33039499..33079454)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (33061118..33095109)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene glutamine and serine rich 1 Neighboring gene uncharacterized LOC105376615 Neighboring gene DEP domain containing 7 Neighboring gene long intergenic non-protein coding RNA 294 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class C pseudogene 1 Neighboring gene cleavage stimulation factor subunit 3 Neighboring gene CSTF3 divergent transcript Neighboring gene ribosomal protein L29 pseudogene 23

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11336, FLJ11386

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in microtubule IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
T-complex protein 11-like protein 1
Names
t-complex 11, testis-specific-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145541.1NP_001139013.1  T-complex protein 11-like protein 1

    See identical proteins and their annotated locations for NP_001139013.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC131263, AK002198, BP281502, DA340843
    Consensus CDS
    CCDS7882.1
    UniProtKB/Swiss-Prot
    Q9NUJ3
    Related
    ENSP00000395070.1, ENST00000432887.5
    Conserved Domains (1) summary
    pfam05794
    Location:78502
    Tcp11; T-complex protein 11
  2. NM_018393.4NP_060863.3  T-complex protein 11-like protein 1

    See identical proteins and their annotated locations for NP_060863.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC131263, AK090646, BP281502, DA088926
    Consensus CDS
    CCDS7882.1
    UniProtKB/Swiss-Prot
    Q9NUJ3
    UniProtKB/TrEMBL
    B3KQZ4
    Related
    ENSP00000335595.4, ENST00000334274.9
    Conserved Domains (1) summary
    pfam05794
    Location:78502
    Tcp11; T-complex protein 11

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    33039499..33079454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017017989.2XP_016873478.1  T-complex protein 11-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam05794
    Location:78505
    Tcp11; T-complex protein 11
  2. XM_011520207.2XP_011518509.1  T-complex protein 11-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011518509.1

    UniProtKB/Swiss-Prot
    Q9NUJ3
    Related
    ENSP00000433067.1, ENST00000531632.6
    Conserved Domains (1) summary
    pfam05794
    Location:78502
    Tcp11; T-complex protein 11
  3. XM_011520206.2XP_011518508.1  T-complex protein 11-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011518508.1

    Conserved Domains (1) summary
    pfam05794
    Location:78505
    Tcp11; T-complex protein 11
  4. XM_011520204.2XP_011518506.1  T-complex protein 11-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011518506.1

    Conserved Domains (1) summary
    pfam05794
    Location:78505
    Tcp11; T-complex protein 11
  5. XM_011520205.2XP_011518507.1  T-complex protein 11-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011518507.1

    Conserved Domains (1) summary
    pfam05794
    Location:78505
    Tcp11; T-complex protein 11
  6. XM_017017990.1XP_016873479.1  T-complex protein 11-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q9NUJ3
    Conserved Domains (1) summary
    pfam05794
    Location:78502
    Tcp11; T-complex protein 11
  7. XM_017017991.1XP_016873480.1  T-complex protein 11-like protein 1 isoform X3

  8. XM_017017992.1XP_016873481.1  T-complex protein 11-like protein 1 isoform X3

RNA

  1. XR_001747920.2 RNA Sequence

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