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MIR3936HG MIR3936 host gene [ Homo sapiens (human) ]

Gene ID: 553103, updated on 23-Nov-2021

Summary

Official Symbol
MIR3936HGprovided by HGNC
Official Full Name
MIR3936 host geneprovided by HGNC
Primary source
HGNC:HGNC:40538
See related
Ensembl:ENSG00000233006
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SLC22A5-AS1
Expression
Ubiquitous expression in kidney (RPKM 2.4), prostate (RPKM 1.9) and 25 other tissues See more
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Genomic context

See MIR3936HG in Genome Data Viewer
Location:
5q31.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (132311276..132369916, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (131646969..131705608, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1449 Neighboring gene PDZ and LIM domain 4 Neighboring gene CAGE-defined mid-level expression enhancer upstream of SLC22A4 Neighboring gene solute carrier family 22 member 4 Neighboring gene microRNA 3936 Neighboring gene solute carrier family 22 member 5 Neighboring gene IRF1 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 2863 Neighboring gene interferon regulatory factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
An atlas of genetic influences on human blood metabolites.
EBI GWAS Catalog
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
EBI GWAS Catalog
Human metabolic individuality in biomedical and pharmaceutical research.
EBI GWAS Catalog
Hundreds of variants clustered in genomic loci and biological pathways affect human height.
EBI GWAS Catalog
Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • SLC22A5 and SLC22A4 antisense RNA 1

Clone Names

  • DKFZp779A135

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110997.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008599, AC034220, AC118464, KF573670
    Related
    ENST00000621103.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    132311276..132369916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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