U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATXN7L3B ataxin 7 like 3B [ Homo sapiens (human) ]

Gene ID: 552889, updated on 6-Sep-2022

Summary

Official Symbol
ATXN7L3Bprovided by HGNC
Official Full Name
ataxin 7 like 3Bprovided by HGNC
Primary source
HGNC:HGNC:37931
See related
Ensembl:ENSG00000253719 MIM:615579; AllianceGenome:HGNC:37931
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lnc-SCA7
Summary
Involved in regulation of gene expression. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ATXN7L3B in Genome Data Viewer
Location:
12q21.1
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (74537835..74545430)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (74511693..74519285)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (74931615..74939210)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987178 Neighboring gene uncharacterized LOC124902967 Neighboring gene uncharacterized LOC101929967 Neighboring gene microtubule associated protein 1 light chain 3 beta pseudogene

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32080, MGC17296

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of gene expression IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ataxin-7-like protein 3B
Names
putative ataxin-7-like protein 3B

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136262.2NP_001129734.1  ataxin-7-like protein 3B

    See identical proteins and their annotated locations for NP_001129734.1

    Status: VALIDATED

    Source sequence(s)
    AC025257
    Consensus CDS
    CCDS53815.1
    UniProtKB/Swiss-Prot
    Q96GX2
    Related
    ENSP00000430000.2, ENST00000519948.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    74537835..74545430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    74511693..74519285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)