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RBM41 RNA binding motif protein 41 [ Homo sapiens (human) ]

Gene ID: 55285, updated on 23-Nov-2021

Summary

Official Symbol
RBM41provided by HGNC
Official Full Name
RNA binding motif protein 41provided by HGNC
Primary source
HGNC:HGNC:25617
See related
Ensembl:ENSG00000089682
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 2.9), skin (RPKM 2.6) and 25 other tissues See more
Orthologs
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Genomic context

See RBM41 in Genome Data Viewer
Location:
Xq22.3
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (107052102..107118822, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (106305115..106362052, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 10711 Neighboring gene MORC family CW-type zinc finger 4 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 40 Neighboring gene nucleoporin 62 C-terminal like Neighboring gene GTF3C6 pseudogene 2 Neighboring gene dynein axonemal assembly factor 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11016, FLJ13670

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables U12 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables pre-mRNA intronic binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016385.1 RefSeqGene

    Range
    5006..61943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001171080.2NP_001164551.1  RNA-binding protein 41 isoform 2

    See identical proteins and their annotated locations for NP_001164551.1

    Status: VALIDATED

    Source sequence(s)
    AK001878, AL390039, DA255574
    Consensus CDS
    CCDS55472.1
    UniProtKB/Swiss-Prot
    Q96IZ5
    Related
    ENSP00000361565.1, ENST00000372487.5
    Conserved Domains (1) summary
    cd12239
    Location:308385
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  2. NM_001324242.2NP_001311171.1  RNA-binding protein 41 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (2) summary
    COG0724
    Location:324414
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:332409
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  3. NM_001324243.1NP_001311172.1  RNA-binding protein 41 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (2) summary
    COG0724
    Location:359449
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:367444
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  4. NM_001324244.2NP_001311173.1  RNA-binding protein 41 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL390039
  5. NM_001394116.1NP_001381045.1  RNA-binding protein 41 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:351423
    RRM; RNA recognition motif
  6. NM_001394117.1NP_001381046.1  RNA-binding protein 41 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    cd12239
    Location:343420
    RRM2_RBM40_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 40 (RBM40) and similar proteins
  7. NM_001394118.1NP_001381047.1  RNA-binding protein 41 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:324393
    RRM; RNA recognition motif
  8. NM_001394119.1NP_001381048.1  RNA-binding protein 41 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:313382
    RRM; RNA recognition motif
  9. NM_001394120.1NP_001381049.1  RNA-binding protein 41 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:310382
    RRM; RNA recognition motif
  10. NM_001394121.1NP_001381050.1  RNA-binding protein 41 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:289358
    RRM; RNA recognition motif
  11. NM_001394122.1NP_001381051.1  RNA-binding protein 41 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:310357
    RRM; RNA recognition motif
  12. NM_001394123.1NP_001381052.1  RNA-binding protein 41 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    cd12239
    Location:246321
    RRM2_RBM40_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 40 (RBM40) and similar proteins
  13. NM_001394124.1NP_001381053.1  RNA-binding protein 41 isoform 14

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:246318
    RRM; RNA recognition motif
  14. NM_001394125.1NP_001381054.1  RNA-binding protein 41 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:211283
    RRM; RNA recognition motif
  15. NM_001394126.1NP_001381055.1  RNA-binding protein 41 isoform 16

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:211283
    RRM; RNA recognition motif
  16. NM_001394127.1NP_001381056.1  RNA-binding protein 41 isoform 17

    Status: VALIDATED

    Source sequence(s)
    AL390039
    Conserved Domains (1) summary
    smart00360
    Location:206259
    RRM; RNA recognition motif
  17. NM_018301.5NP_060771.3  RNA-binding protein 41 isoform 1

    See identical proteins and their annotated locations for NP_060771.3

    Status: VALIDATED

    Source sequence(s)
    AL390039, BC006986, DA255574
    Consensus CDS
    CCDS14526.1
    UniProtKB/Swiss-Prot
    Q96IZ5
    Related
    ENSP00000361557.3, ENST00000372479.7
    Conserved Domains (1) summary
    cd12239
    Location:308385
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

RNA

  1. NR_136728.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390039
  2. NR_136729.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390039
  3. NR_136730.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK023732, AL390039
  4. NR_136731.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390039
  5. NR_136732.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390039

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    107052102..107118822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011530980.3XP_011529282.1  RNA-binding protein 41 isoform X1

    See identical proteins and their annotated locations for XP_011529282.1

    Conserved Domains (2) summary
    COG0724
    Location:359449
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:367444
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
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