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LOC551517 beta-TrCP [ Apis mellifera (honey bee) ]

Gene ID: 551517, updated on 8-Jan-2019

Summary

Gene symbol
LOC551517
Gene description
beta-TrCP
See related
BEEBASE:GB50132
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis
Also known as
slmb

Genomic context

See LOC551517 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
9
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG15 NC_037652.1 (5814862..5822003)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG15 NC_007084.3 (6258360..6265970)

Linkage Group LG15 - NC_037652.1Genomic Context describing neighboring genes Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene phospholipid phosphatase 5 Neighboring gene exportin-7 Neighboring gene crossover junction endonuclease EME1

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Hedgehog signaling pathway - fly, organism-specific biosystem (from KEGG)
    Hedgehog signaling pathway - fly, organism-specific biosystemHedgehog (Hh) signaling plays essential roles in embryonic development and adult tissue homeostasis. It is first elucidated by genetic studies in Drosophila and the core of the Hh signaling pathway i...
  • SCF-BTRC complex, organism-specific biosystem (from KEGG)
    SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • SCF-BTRC complex, conserved biosystem (from KEGG)
    SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Toll and Imd signaling pathway, organism-specific biosystem (from KEGG)
    Toll and Imd signaling pathway, organism-specific biosystemInsects, such as Drosophila, have evolved complex mechanisms to combat microbial infection. TOLL and IMD pathways are responsible for the immune response that functions through the production of anti...
  • Toll and Imd signaling pathway, conserved biosystem (from KEGG)
    Toll and Imd signaling pathway, conserved biosystemInsects, such as Drosophila, have evolved complex mechanisms to combat microbial infection. TOLL and IMD pathways are responsible for the immune response that functions through the production of anti...
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General protein information

Preferred Names
beta-TrCP
Names
supernumerary limbs

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037652.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    5814862..5822003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_623912.6XP_623915.2  beta-TrCP isoform X1

    See identical proteins and their annotated locations for XP_623915.2

    UniProtKB/TrEMBL
    A0A088AF87
    Conserved Domains (5) summary
    COG2319
    Location:171499
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:213491
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:5088
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:92139
    F-box-like; F-box-like
    sd00039
    Location:216251
    7WD40; WD40 repeat [structural motif]
  2. XM_006563381.3XP_006563444.1  beta-TrCP isoform X2

    See identical proteins and their annotated locations for XP_006563444.1

    Conserved Domains (5) summary
    COG2319
    Location:171499
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:213491
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:5088
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:92139
    F-box-like; F-box-like
    sd00039
    Location:216251
    7WD40; WD40 repeat [structural motif]
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