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RADX RPA1 related single stranded DNA binding protein, X-linked [ Homo sapiens (human) ]

Gene ID: 55086, updated on 7-Aug-2022

Summary

Official Symbol
RADXprovided by HGNC
Official Full Name
RPA1 related single stranded DNA binding protein, X-linkedprovided by HGNC
Primary source
HGNC:HGNC:25486
See related
Ensembl:ENSG00000147231 AllianceGenome:HGNC:25486
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf57
Summary
Enables single-stranded DNA binding activity. Involved in negative regulation of double-strand break repair via homologous recombination. Located in nuclear speck and replication fork. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal (RPKM 4.5), ovary (RPKM 4.0) and 24 other tissues See more
Orthologs
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Genomic context

See RADX in Genome Data Viewer
Location:
Xq22.3
Exon count:
14
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (106611978..106679439)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (105048421..105115882)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (105855208..105922669)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1 like 4 pseudogene 2 Neighboring gene serpin family A member 7 pseudogene 1 Neighboring gene microRNA 548an Neighboring gene uncharacterized LOC124905235 Neighboring gene ring finger protein 128 Neighboring gene TBC1 domain family member 8B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10178, FLJ14191

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in nuclear speck IDA
Inferred from Direct Assay
more info
 
is_active_in replication fork IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in replication fork IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
RPA-related protein RADX
Names
RPA-related and RAD51-antagonist, X-chromosome
RPA-related, RAD51-antagonist on X-chromosome
uncharacterized protein CXorf57

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021317.1 RefSeqGene

    Range
    5049..72510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184782.2NP_001171711.1  RPA-related protein RADX isoform 2

    See identical proteins and their annotated locations for NP_001171711.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2, which is shorter than isoform 1.
    Source sequence(s)
    AK024253, AL606833, BC047503, BC070110, DB065928
    Consensus CDS
    CCDS55470.1
    UniProtKB/Swiss-Prot
    Q6NSI4
    Related
    ENSP00000361623.2, ENST00000372544.6
    Conserved Domains (1) summary
    cl28407
    Location:95412
    RFA1; ssDNA-binding replication factor A, large subunit [Replication, recombination and repair]
  2. NM_018015.6NP_060485.4  RPA-related protein RADX isoform 1

    See identical proteins and their annotated locations for NP_060485.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC011483, BC047503, BC070110
    Consensus CDS
    CCDS14519.1
    UniProtKB/Swiss-Prot
    Q6NSI4, Q9NWA6
    Related
    ENSP00000361628.4, ENST00000372548.9
    Conserved Domains (1) summary
    pfam17659
    Location:2849
    DUF5521; Family of unknown function (DUF5521)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    106611978..106679439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047442233.1XP_047298189.1  RPA-related protein RADX isoform X1

    Related
    ENSP00000432238.1, ENST00000461251.5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    105048421..105115882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)