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C9orf40 chromosome 9 open reading frame 40 [ Homo sapiens (human) ]

Gene ID: 55071, updated on 24-Nov-2020

Summary

Official Symbol
C9orf40provided by HGNC
Official Full Name
chromosome 9 open reading frame 40provided by HGNC
Primary source
HGNC:HGNC:23433
See related
Ensembl:ENSG00000135045
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 6.6), small intestine (RPKM 6.0) and 24 other tissues See more
Orthologs

Genomic context

See C9orf40 in Genome Data Viewer
Location:
9q21.13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (74946583..74952912, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (77561499..77567802, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily M member 6 Neighboring gene Sharpr-MPRA regulatory region 214 Neighboring gene required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene Neighboring gene CARNMT1 antisense RNA 1 Neighboring gene carnosine N-methyltransferase 1 Neighboring gene nicotinamide riboside kinase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10110, FLJ25795

General protein information

Preferred Names
uncharacterized protein C9orf40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017998.3NP_060468.2  uncharacterized protein C9orf40

    See identical proteins and their annotated locations for NP_060468.2

    Status: VALIDATED

    Source sequence(s)
    AK000972, AL158825, BC039588, BM126413
    Consensus CDS
    CCDS6648.1
    UniProtKB/Swiss-Prot
    Q8IXQ3
    Related
    ENSP00000366050.5, ENST00000376854.6
    Conserved Domains (1) summary
    pfam15017
    Location:149193
    WRNPLPNID; Putative WW-binding domain and destruction box

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    74946583..74952912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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