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SPATA6L spermatogenesis associated 6 like [ Homo sapiens (human) ]

Gene ID: 55064, updated on 26-Oct-2022

Summary

Official Symbol
SPATA6Lprovided by HGNC
Official Full Name
spermatogenesis associated 6 likeprovided by HGNC
Primary source
HGNC:HGNC:25472
See related
Ensembl:ENSG00000106686 AllianceGenome:HGNC:25472
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf68; bA6J24.2
Summary
Predicted to enable myosin light chain binding activity. Predicted to be involved in spermatogenesis. Predicted to be located in sperm connecting piece. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 1.8), gall bladder (RPKM 0.4) and 16 other tissues See more
Orthologs
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Genomic context

See SPATA6L in Genome Data Viewer
Location:
9p24.2-p24.1
Exon count:
20
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (4588821..4666480, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (4592492..4670154, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (4588821..4666480, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene GLIS family zinc finger 3 Neighboring gene Sharpr-MPRA regulatory region 14111 Neighboring gene solute carrier family 1 member 1 Neighboring gene ribosomal protein S6 pseudogene 11 Neighboring gene CDC37L1 divergent transcript Neighboring gene cell division cycle 37 like 1, HSP90 cochaperone Neighboring gene phospholipid phosphatase 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10058

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables myosin light chain binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in sperm connecting piece IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis associated 6-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039395.4NP_001034484.3  spermatogenesis associated 6-like protein isoform d

    See identical proteins and their annotated locations for NP_001034484.3

    Status: VALIDATED

    Source sequence(s)
    AK295831, AL136231, H05132
    Consensus CDS
    CCDS43785.2
    UniProtKB/Swiss-Prot
    Q8N4H0
    Related
    ENSP00000417063.1, ENST00000475086.5
    Conserved Domains (1) summary
    pfam14909
    Location:773
    SPATA6; Spermatogenesis-assoc protein 6
  2. NM_001353484.2NP_001340413.1  spermatogenesis associated 6-like protein isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1), as well as variant 2, encodes isoform a.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  3. NM_001353485.2NP_001340414.1  spermatogenesis associated 6-like protein isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variant 1, encodes isoform a.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  4. NM_001353486.2NP_001340415.1  spermatogenesis associated 6-like protein isoform b

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Consensus CDS
    CCDS6453.1
    UniProtKB/Swiss-Prot
    Q8IY90
    Related
    ENSP00000506787.1, ENST00000682582.1
    Conserved Domains (1) summary
    pfam14909
    Location:7131
    SPATA6; Spermatogenesis-assoc protein 6
  5. NM_001353487.1NP_001340416.1  spermatogenesis associated 6-like protein isoform c

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:198
    SPATA6; Spermatogenesis-assoc protein 6
  6. NM_001353488.1NP_001340417.1  spermatogenesis associated 6-like protein isoform e

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:140
    SPATA6; Spermatogenesis-assoc protein 6
  7. NM_001353489.1NP_001340418.1  spermatogenesis associated 6-like protein isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variant 8, encodes isoform f.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  8. NM_001353490.1NP_001340419.1  spermatogenesis associated 6-like protein isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variant 7, encodes isoform f.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  9. NM_001353491.2NP_001340420.1  spermatogenesis associated 6-like protein isoform g

    Status: VALIDATED

    Source sequence(s)
    AL136231

RNA

  1. NR_148443.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  2. NR_148444.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Related
    ENST00000486047.5
  3. NR_148445.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  4. NR_148446.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  5. NR_148447.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  6. NR_148448.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    4588821..4666480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047423558.1XP_047279514.1  spermatogenesis associated 6-like protein isoform X1

  2. XM_047423557.1XP_047279513.1  spermatogenesis associated 6-like protein isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    4592492..4670154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017985.3: Suppressed sequence

    Description
    NM_017985.3: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.