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SPATA6L spermatogenesis associated 6 like [ Homo sapiens (human) ]

Gene ID: 55064, updated on 8-Oct-2017
Official Symbol
SPATA6Lprovided by HGNC
Official Full Name
spermatogenesis associated 6 likeprovided by HGNC
Primary source
HGNC:HGNC:25472
See related
Ensembl:ENSG00000106686 Vega:OTTHUMG00000019469
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf68; bA6J24.2
Orthologs
Location:
9p24.2-p24.1
Exon count:
21
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 9 NC_000009.12 (4540092..4666674, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (4553386..4666674, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene GLIS family zinc finger 3 Neighboring gene uncharacterized LOC107986989 Neighboring gene RNA, U6 small nuclear 694, pseudogene Neighboring gene solute carrier family 1 member 1 Neighboring gene CDC37L1 antisense RNA 1 (head to head) Neighboring gene ribosomal protein S6 pseudogene 11 Neighboring gene cell division cycle 37 like 1 Neighboring gene phospholipid phosphatase 6

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ10058
Preferred Names
spermatogenesis associated 6-like protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039395.3NP_001034484.3  spermatogenesis associated 6-like protein isoform d

    See identical proteins and their annotated locations for NP_001034484.3

    Status: VALIDATED

    Source sequence(s)
    AK295831, AL136231, DA234263, H05132
    Consensus CDS
    CCDS43785.2
    UniProtKB/Swiss-Prot
    Q8N4H0
    Related
    ENSP00000417063.1, OTTHUMP00000214972, ENST00000475086.5, OTTHUMT00000354814
    Conserved Domains (1) summary
    pfam14909
    Location:773
    SPATA6; Spermatogenesis-assoc protein 6
  2. NM_001353484.1NP_001340413.1  spermatogenesis associated 6-like protein isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1), as well as variant 2, encodes isoform a.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  3. NM_001353485.1NP_001340414.1  spermatogenesis associated 6-like protein isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variant 1, encodes isoform a.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  4. NM_001353486.1NP_001340415.1  spermatogenesis associated 6-like protein isoform b

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:7131
    SPATA6; Spermatogenesis-assoc protein 6
  5. NM_001353487.1NP_001340416.1  spermatogenesis associated 6-like protein isoform c

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:198
    SPATA6; Spermatogenesis-assoc protein 6
  6. NM_001353488.1NP_001340417.1  spermatogenesis associated 6-like protein isoform e

    Status: VALIDATED

    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:140
    SPATA6; Spermatogenesis-assoc protein 6
  7. NM_001353489.1NP_001340418.1  spermatogenesis associated 6-like protein isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variant 8, encodes isoform f.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  8. NM_001353490.1NP_001340419.1  spermatogenesis associated 6-like protein isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variant 7, encodes isoform f.
    Source sequence(s)
    AL136231
    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  9. NM_001353491.1NP_001340420.1  spermatogenesis associated 6-like protein isoform g

    Status: VALIDATED

    Source sequence(s)
    AL136231

RNA

  1. NR_148443.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  2. NR_148444.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  3. NR_148445.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  4. NR_148446.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  5. NR_148447.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231
  6. NR_148448.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136231

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p7 Primary Assembly

    Range
    4540092..4666674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017014882.1XP_016870371.1  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  2. XM_017014883.1XP_016870372.1  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  3. XM_006716801.2XP_006716864.1  spermatogenesis associated 6-like protein isoform X6

    See identical proteins and their annotated locations for XP_006716864.1

    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  4. XM_006716798.3XP_006716861.1  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  5. XM_006716799.3XP_006716862.1  spermatogenesis associated 6-like protein isoform X2

    UniProtKB/Swiss-Prot
    Q8N4H0
    Related
    ENSP00000418458.1, OTTHUMP00000214976, ENST00000461761.5, OTTHUMT00000051575
    Conserved Domains (1) summary
    pfam14909
    Location:7131
    SPATA6; Spermatogenesis-assoc protein 6
  6. XM_011517954.1XP_011516256.1  spermatogenesis associated 6-like protein isoform X6

    See identical proteins and their annotated locations for XP_011516256.1

    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  7. XM_011517957.1XP_011516259.1  spermatogenesis associated 6-like protein isoform X7

    See identical proteins and their annotated locations for XP_011516259.1

  8. XM_017014885.1XP_016870374.1  spermatogenesis associated 6-like protein isoform X5

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  9. XM_006716795.2XP_006716858.1  spermatogenesis associated 6-like protein isoform X1

    See identical proteins and their annotated locations for XP_006716858.1

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  10. XM_017014881.1XP_016870370.1  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  11. XM_011517956.1XP_011516258.1  spermatogenesis associated 6-like protein isoform X7

  12. XM_011517952.1XP_011516254.1  spermatogenesis associated 6-like protein isoform X3

    See identical proteins and their annotated locations for XP_011516254.1

    Conserved Domains (1) summary
    pfam14909
    Location:1112
    SPATA6; Spermatogenesis-assoc protein 6
  13. XM_017014887.1XP_016870376.1  spermatogenesis associated 6-like protein isoform X6

    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  14. XM_017014884.1XP_016870373.1  spermatogenesis associated 6-like protein isoform X4

    Conserved Domains (1) summary
    pfam14909
    Location:198
    SPATA6; Spermatogenesis-assoc protein 6
  15. XM_006716800.2XP_006716863.1  spermatogenesis associated 6-like protein isoform X3

    See identical proteins and their annotated locations for XP_006716863.1

    Conserved Domains (1) summary
    pfam14909
    Location:1112
    SPATA6; Spermatogenesis-assoc protein 6
  16. XM_017014886.1XP_016870375.1  spermatogenesis associated 6-like protein isoform X6

    Conserved Domains (1) summary
    pfam14909
    Location:122
    SPATA6; Spermatogenesis-assoc protein 6
  17. XM_011517958.1XP_011516260.1  spermatogenesis associated 6-like protein isoform X7

    See identical proteins and their annotated locations for XP_011516260.1

RNA

  1. XR_001746335.1 RNA Sequence

  2. XR_001746339.1 RNA Sequence

  3. XR_001746336.1 RNA Sequence

  4. XR_001746342.1 RNA Sequence

  5. XR_001746341.1 RNA Sequence

  6. XR_001746338.1 RNA Sequence

  7. XR_001746340.1 RNA Sequence

  8. XR_001746337.1 RNA Sequence

Alternate CHM1_1.1

Genomic

  1. NC_018920.2 Alternate CHM1_1.1

    Range
    4598289..4666754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017985.3: Suppressed sequence

    Description
    NM_017985.3: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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