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SUSD4 sushi domain containing 4 [ Homo sapiens (human) ]

Gene ID: 55061, updated on 11-Jun-2021

Summary

Official Symbol
SUSD4provided by HGNC
Official Full Name
sushi domain containing 4provided by HGNC
Primary source
HGNC:HGNC:25470
See related
Ensembl:ENSG00000143502 MIM:615827
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO222
Expression
Biased expression in esophagus (RPKM 11.1), ovary (RPKM 10.5) and 13 other tissues See more
Orthologs
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Genomic context

See SUSD4 in Genome Data Viewer
Location:
1q41
Exon count:
15
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (223220826..223365271, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (223394173..223537518, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985323 Neighboring gene toll like receptor 5 Neighboring gene uncharacterized LOC105373025 Neighboring gene RNA, U4 small nuclear 57, pseudogene Neighboring gene coiled-coil domain containing 185

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10052

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sushi domain-containing protein 4
Names
YHGM196
testicular secretory protein Li 55

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037175.3NP_001032252.1  sushi domain-containing protein 4 isoform b precursor

    See identical proteins and their annotated locations for NP_001032252.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding region compared to variant 1. The resulting isoform (b) is shorter and has a distinct C-terminus compared to isoform a.
    Source sequence(s)
    BC004888, DA125047
    Consensus CDS
    CCDS31034.1
    UniProtKB/Swiss-Prot
    Q5VX71
    UniProtKB/TrEMBL
    A0A140VK55
    Related
    ENSP00000339926.6, ENST00000344029.6
    Conserved Domains (1) summary
    cl27761
    Location:30238
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
  2. NM_017982.4NP_060452.3  sushi domain-containing protein 4 isoform a precursor

    See identical proteins and their annotated locations for NP_060452.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK096265, AY358495, BF446433, DA125047
    Consensus CDS
    CCDS41471.1
    UniProtKB/Swiss-Prot
    Q5VX71
    UniProtKB/TrEMBL
    B3KTY0
    Related
    ENSP00000355843.4, ENST00000366878.9
    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:243297
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54296
    PHA02927; secreted complement-binding protein; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    223220826..223365271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024447937.1XP_024303705.1  sushi domain-containing protein 4 isoform X5

  2. XM_024447936.1XP_024303704.1  sushi domain-containing protein 4 isoform X4

  3. XM_017001583.1XP_016857072.1  sushi domain-containing protein 4 isoform X1

  4. XM_017001584.1XP_016857073.1  sushi domain-containing protein 4 isoform X2

    Related
    ENSP00000505301.1, ENST00000681285.1
  5. XM_006711408.2XP_006711471.1  sushi domain-containing protein 4 isoform X4

    See identical proteins and their annotated locations for XP_006711471.1

    Related
    ENSP00000477432.1, ENST00000608996.5
    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:245299
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54298
    PHA02927; secreted complement-binding protein; Provisional
  6. XM_005273172.1XP_005273229.1  sushi domain-containing protein 4 isoform X8

    See identical proteins and their annotated locations for XP_005273229.1

    UniProtKB/TrEMBL
    B7Z469
    Conserved Domains (2) summary
    cd00033
    Location:2077
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:83137
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
  7. XM_011509687.1XP_011507989.1  sushi domain-containing protein 4 isoform X7

    Conserved Domains (2) summary
    cd00033
    Location:2077
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:85139
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
  8. XM_017001587.1XP_016857076.1  sushi domain-containing protein 4 isoform X5

    UniProtKB/Swiss-Prot
    Q5VX71
    Related
    ENSP00000505495.1, ENST00000681669.1
    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:243297
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54296
    PHA02927; secreted complement-binding protein; Provisional
  9. XM_005273169.1XP_005273226.1  sushi domain-containing protein 4 isoform X4

    See identical proteins and their annotated locations for XP_005273226.1

    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:245299
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54298
    PHA02927; secreted complement-binding protein; Provisional
  10. XM_017001585.1XP_016857074.1  sushi domain-containing protein 4 isoform X3

  11. XM_017001588.1XP_016857077.1  sushi domain-containing protein 4 isoform X5

    UniProtKB/Swiss-Prot
    Q5VX71
    Related
    ENSP00000344219.3, ENST00000343846.7
    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:243297
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54296
    PHA02927; secreted complement-binding protein; Provisional
  12. XM_011509685.1XP_011507987.1  sushi domain-containing protein 4 isoform X4

    See identical proteins and their annotated locations for XP_011507987.1

    Conserved Domains (3) summary
    cd00033
    Location:180237
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:245299
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:54298
    PHA02927; secreted complement-binding protein; Provisional
  13. XM_017001586.1XP_016857075.1  sushi domain-containing protein 4 isoform X3

  14. XM_024447940.1XP_024303708.1  sushi domain-containing protein 4 isoform X9

    Conserved Domains (1) summary
    cl27761
    Location:30238
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
  15. XM_017001589.1XP_016857078.1  sushi domain-containing protein 4 isoform X6

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