Format

Send to:

Choose Destination

osr2 odd-skipped related transciption factor 2 [ Danio rerio (zebrafish) ]

Gene ID: 550389, updated on 6-May-2021

Summary

Official Symbol
osr2provided by ZNC
Official Full Name
odd-skipped related transciption factor 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-183
See related
Ensembl:ENSDARG00000038006
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:111995
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See osr2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (54402310..54405982, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (54698367..54707551, complement)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (58050103..58053829, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 13B-like Neighboring gene vacuolar protein sorting-associated protein 13B Neighboring gene vegetative cell wall protein gp1-like Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein odd-skipped-related 2
Names
odd-skipped related 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017694.1NP_001017694.1  protein odd-skipped-related 2

    See identical proteins and their annotated locations for NP_001017694.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093148
    UniProtKB/Swiss-Prot
    Q567J8
    UniProtKB/TrEMBL
    B2GRK2
    Related
    ENSDARP00000055394.4, ENSDART00000055395.6
    Conserved Domains (2) summary
    sd00017
    Location:136156
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:148173
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    54402310..54405982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173555.4XP_005173612.1  protein odd-skipped-related 2 isoform X1

    See identical proteins and their annotated locations for XP_005173612.1

    Conserved Domains (4) summary
    COG5048
    Location:55276
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:136156
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:218240
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:148173
    zf-H2C2_2; Zinc-finger double domain
Support Center