U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ubb ubiquitin B [ Danio rerio (zebrafish) ]

Gene ID: 550134, updated on 9-Sep-2025
Official Symbol
ubbprovided by ZNC
Official Full Name
ubiquitin Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050411-10
See related
Ensembl:ENSDARG00000093313 AllianceGenome:ZFIN:ZDB-GENE-050411-10
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ubc; zUBC; Ubi-p63E; im:6892314; zgc:172187; si:ch211-202a12.3
Summary
Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBB (ubiquitin B). [provided by Alliance of Genome Resources, Jul 2025]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table
See ubb in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 5 NC_133180.1 (42900243..42904108)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 5 NC_007116.7 (42092226..42096333)

Chromosome 5 - NC_133180.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC141385576 Neighboring gene chemokine (C-X-C motif) ligand 11, duplicate 6 Neighboring gene flotillin-2a-like Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 5 Neighboring gene ER membrane protein complex subunit 6 Neighboring gene sedoheptulokinase

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017
Products Interactant Other Gene Complex Source Pubs Description

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein tag activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
polyubiquitin-C; polyubiquitin-B
Names
ubiquitin C

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001441697.1NP_001428626.1  polyubiquitin-C

    Status: VALIDATED

    Source sequence(s)
    JBMGRA010000005

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133180.1 Reference GRCz12tu Primary Assembly

    Range
    42900243..42904108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073951262.1XP_073807363.1  polyubiquitin-B

    UniProtKB/TrEMBL
    Q6IS68

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013272.3: Suppressed sequence

    Description
    NM_001013272.3: This RefSeq was removed because currently there is insufficient support for the transcript.