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tef thyrotrophic embryonic factor [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 550073, updated on 15-Nov-2019

Summary

Official Symbol
tefprovided by Xenbase
Official Full Name
thyrotrophic embryonic factorprovided by Xenbase
Primary source
Xenbase:XB-GENE-962732
See related
Ensembl:ENSXETG00000000051
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xtef
Orthologs

Genomic context

See tef in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (111449681..111464714)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668236.1 (83372124..83387188)

Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene chondroadherin-like Neighboring gene Ran GTPase activating protein 1 Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene serine/threonine-protein kinase N1-like Neighboring gene serine/threonine-protein kinase N2-like

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
thyrotroph embryonic factor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017319.2NP_001017319.1  thyrotroph embryonic factor

    See identical proteins and their annotated locations for NP_001017319.1

    Status: PROVISIONAL

    Source sequence(s)
    CR855411
    UniProtKB/TrEMBL
    Q28DN7
    Related
    ENSXETP00000040014.1, ENSXETT00000041283.1
    Conserved Domains (2) summary
    cd14695
    Location:219278
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
    pfam12293
    Location:132184
    T4BSS_DotH_IcmK; Putative outer membrane core complex of type IVb secretion

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    111449681..111464714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961199.2XP_012816653.1  thyrotroph embryonic factor isoform X1

    Related
    ENSXETP00000039995.1, ENSXETT00000041263.1
    Conserved Domains (2) summary
    cd14695
    Location:208267
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
    pfam12293
    Location:121173
    T4BSS_DotH_IcmK; Putative outer membrane core complex of type IVb secretion
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