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cab39l calcium binding protein 39 like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549934, updated on 5-Mar-2024

Summary

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Official Symbol
cab39lprovided by Xenbase
Official Full Name
calcium binding protein 39 likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-953216
See related
Ensembl:ENSXETG00000015659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (149136016..149180521, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (146269747..146312018, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene motilin receptor Neighboring gene cytidine and dCMP deaminase domain containing 1 Neighboring gene SET domain bifurcated 2 Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
calcium-binding protein 39-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017180.2 → NP_001017180.1  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_001017180.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760674
    UniProtKB/TrEMBL
    A0JPC1, F6S9V6
    Related
    ENSXETP00000034173.3, ENSXETT00000034173.4
    Conserved Domains (1) summary
    pfam08569
    Location:6 → 333
    Mo25; Mo25-like

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    149136016..149180521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012957037.2 → XP_012812491.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_012812491.1

    UniProtKB/TrEMBL
    A0JPC1, F6S9V6
    Conserved Domains (1) summary
    pfam08569
    Location:6 → 333
    Mo25; Mo25-like

  2. XM_012957038.3 → XP_012812492.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_012812492.1

    UniProtKB/TrEMBL
    A0JPC1, F6S9V6
    Related
    ENSXETP00000110918.1, ENSXETT00000120039.1
    Conserved Domains (1) summary
    pfam08569
    Location:6 → 333
    Mo25; Mo25-like

  3. XM_012957040.3 → XP_012812494.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_012812494.1

    UniProtKB/TrEMBL
    A0JPC1, F6S9V6
    Conserved Domains (1) summary
    pfam08569
    Location:6 → 333
    Mo25; Mo25-like
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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