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CT55 cancer/testis antigen 55 [ Homo sapiens (human) ]

Gene ID: 54967, updated on 10-Dec-2019

Summary

Official Symbol
CT55provided by HGNC
Official Full Name
cancer/testis antigen 55provided by HGNC
Primary source
HGNC:HGNC:26047
See related
Ensembl:ENSG00000169551
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf48; BJHCC20A
Expression
Restricted expression toward testis (RPKM 1.5) See more
Orthologs

Genomic context

See CT55 in Genome Data Viewer
Location:
Xq26.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135156536..135171827, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134290461..134305751, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SMIM10L2B antisense RNA 1 Neighboring gene zinc finger protein 449 pseudogene Neighboring gene cancer/testis antigen 55 pseudogene Neighboring gene cancer/testis antigen 55 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20527

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
cancer/testis antigen 55
Names
BRCA2-interacting protein
tumor antigen BJ-HCC-20

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031705.2NP_001026875.1  cancer/testis antigen 55 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001026875.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer isoform (1).
    Source sequence(s)
    AF520814, AY352211
    Consensus CDS
    CCDS35400.1
    UniProtKB/Swiss-Prot
    Q8WUE5
    Related
    ENSP00000276241.6, ENST00000276241.10
    Conserved Domains (1) summary
    pfam14444
    Location:182233
    S1-like; S1-like
  2. NM_017863.2NP_060333.1  cancer/testis antigen 55 isoform 2 precursor

    See identical proteins and their annotated locations for NP_060333.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the C-terminus compared to isoform 1.
    Source sequence(s)
    AY352211
    Consensus CDS
    CCDS14647.1
    UniProtKB/Swiss-Prot
    Q8WUE5
    Related
    ENSP00000343893.2, ENST00000344129.2
    Conserved Domains (1) summary
    pfam14444
    Location:182233
    S1-like; S1-like

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135156536..135171827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005262427.1XP_005262484.1  cancer/testis antigen 55 isoform X1

    Conserved Domains (1) summary
    pfam14444
    Location:182233
    S1-like; S1-like
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