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fer fer (fps/fes related) tyrosine kinase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549656, updated on 9-Feb-2017
Symbol
ferprovided by Xenbase
Full Name
fer (fps/fes related) tyrosine kinaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-1015488
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (135830649..135917200, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (32508680..32594426)

Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene mannosidase, alpha, class 2A, member 1 Neighboring gene praja ring finger 2, E3 ubiquitin protein ligase Neighboring gene uncharacterized protein MGC147136 Neighboring gene ephrin-A5

Homology

Preferred Names
tyrosine-protein kinase Fer
NP_001016902.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016902.2NP_001016902.1  tyrosine-protein kinase Fer

    See identical proteins and their annotated locations for NP_001016902.1

    Status: PROVISIONAL

    Source sequence(s)
    CR848518
    UniProtKB/TrEMBL
    Q28DZ6
    Conserved Domains (3) summary
    cd07686
    Location:5238
    F-BAR_Fer; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase
    cd10361
    Location:453538
    SH2_Fps_family; Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins
    cl21453
    Location:566642
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    135830649..135917200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962969.2XP_012818423.1  tyrosine-protein kinase Fer isoform X1

    See identical proteins and their annotated locations for XP_012818423.1

    Conserved Domains (4) summary
    cd07686
    Location:5238
    F-BAR_Fer; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase
    cd10361
    Location:453538
    SH2_Fps_family; Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins
    pfam07714
    Location:563814
    Pkinase_Tyr; Protein tyrosine kinase
    cl21453
    Location:566815
    PKc_like; Protein Kinases, catalytic domain
  2. XM_012962967.2XP_012818421.1  tyrosine-protein kinase Fer isoform X1

    See identical proteins and their annotated locations for XP_012818421.1

    Conserved Domains (4) summary
    cd07686
    Location:5238
    F-BAR_Fer; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase
    cd10361
    Location:453538
    SH2_Fps_family; Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins
    pfam07714
    Location:563814
    Pkinase_Tyr; Protein tyrosine kinase
    cl21453
    Location:566815
    PKc_like; Protein Kinases, catalytic domain
  3. XM_012962975.2XP_012818429.1  tyrosine-protein kinase Fer isoform X1

    See identical proteins and their annotated locations for XP_012818429.1

    Conserved Domains (4) summary
    cd07686
    Location:5238
    F-BAR_Fer; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase
    cd10361
    Location:453538
    SH2_Fps_family; Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins
    pfam07714
    Location:563814
    Pkinase_Tyr; Protein tyrosine kinase
    cl21453
    Location:566815
    PKc_like; Protein Kinases, catalytic domain
  4. XM_012962979.2XP_012818433.1  tyrosine-protein kinase Fer isoform X2

    UniProtKB/TrEMBL
    F6TIZ5
    Conserved Domains (1) summary
    cl12013
    Location:5238
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
  5. XM_018093579.1XP_017949068.1  tyrosine-protein kinase Fer isoform X3

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