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gtf2e2 general transcription factor IIE subunit 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549309, updated on 20-Jun-2018

Summary

Official Symbol
gtf2e2provided by Xenbase
Official Full Name
general transcription factor IIE subunit 2provided by Xenbase
Primary source
Xenbase:XB-GENE-962385
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tf2e2; tfiie-b; TFIIE-beta
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See gtf2e2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (90074988..90096468)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (137044764..137066244)

Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101731273 Neighboring gene glutathione reductase Neighboring gene store-operated calcium entry-associated regulatory factor Neighboring gene small integral membrane protein 18 Neighboring gene RNA binding protein with multiple splicing Neighboring gene dynactin subunit 6

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
transcription initiation factor IIE subunit beta
Names
general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016555.2NP_001016555.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for NP_001016555.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760710
    UniProtKB/TrEMBL
    Q28HW0
    Conserved Domains (1) summary
    cd07977
    Location:65143
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    90074988..90096468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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