Format

Send to:

Choose Destination

btrc beta-transducin repeat containing E3 ubiquitin protein ligase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549140, updated on 15-Nov-2019

Summary

Official Symbol
btrcprovided by Xenbase
Official Full Name
beta-transducin repeat containing E3 ubiquitin protein ligaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-486122
See related
Ensembl:ENSXETG00000005636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fwd1; btrcp; fbw1a; fbxw1; btrcp1; fbxw1a; betaTrCP; Beta-TrCP
Orthologs

Genomic context

See btrc in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (22238308..22336449)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668240.1 (25083067..25181195)

Chromosome 7 - NC_030683.1Genomic Context describing neighboring genes Neighboring gene protein kinase C delta type-like Neighboring gene ladybird homeobox 1 Neighboring gene solute carrier family 2, facilitated glucose transporter member 9-like Neighboring gene uncharacterized LOC101731243

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
F-box/WD repeat-containing protein 1A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016386.2NP_001016386.1  F-box/WD repeat-containing protein 1A

    See identical proteins and their annotated locations for NP_001016386.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761199
    UniProtKB/TrEMBL
    Q28GV9
    Related
    ENSXETP00000020938.1, ENSXETT00000011250.1
    Conserved Domains (5) summary
    COG2319
    Location:219515
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:232510
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:68106
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:110157
    F-box-like; F-box-like
    sd00039
    Location:235270
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030683.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    22238308..22336449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966585.2XP_012822039.1  F-box/WD repeat-containing protein 1A isoform X6

    See identical proteins and their annotated locations for XP_012822039.1

    Related
    ENSXETP00000020992.1, ENSXETT00000005613.1
    Conserved Domains (5) summary
    COG2319
    Location:249545
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:262540
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like; F-box-like
    sd00039
    Location:265300
    7WD40; WD40 repeat [structural motif]
  2. XM_012966580.2XP_012822034.1  F-box/WD repeat-containing protein 1A isoform X4

    See identical proteins and their annotated locations for XP_012822034.1

    Conserved Domains (5) summary
    COG2319
    Location:285581
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:298576
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:134172
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:176223
    F-box-like; F-box-like
    sd00039
    Location:301336
    7WD40; WD40 repeat [structural motif]
  3. XM_012966576.2XP_012822030.1  F-box/WD repeat-containing protein 1A isoform X1

    Conserved Domains (5) summary
    COG2319
    Location:295591
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:308586
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:144182
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:186233
    F-box-like; F-box-like
    sd00039
    Location:311346
    7WD40; WD40 repeat [structural motif]
  4. XM_012966577.2XP_012822031.1  F-box/WD repeat-containing protein 1A isoform X2

    Conserved Domains (5) summary
    COG2319
    Location:265561
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:278556
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:114152
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:156203
    F-box-like; F-box-like
    sd00039
    Location:281316
    7WD40; WD40 repeat [structural motif]
  5. XM_012966578.2XP_012822032.1  F-box/WD repeat-containing protein 1A isoform X3

    Conserved Domains (5) summary
    COG2319
    Location:259555
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:272550
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:108146
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:150197
    F-box-like; F-box-like
    sd00039
    Location:275310
    7WD40; WD40 repeat [structural motif]
  6. XM_012966579.2XP_012822033.1  F-box/WD repeat-containing protein 1A isoform X4

    See identical proteins and their annotated locations for XP_012822033.1

    Related
    ENSXETP00000021054.1, ENSXETT00000005147.1
    Conserved Domains (5) summary
    COG2319
    Location:285581
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:298576
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:134172
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:176223
    F-box-like; F-box-like
    sd00039
    Location:301336
    7WD40; WD40 repeat [structural motif]
  7. XM_012966581.2XP_012822035.1  F-box/WD repeat-containing protein 1A isoform X4

    See identical proteins and their annotated locations for XP_012822035.1

    Conserved Domains (5) summary
    COG2319
    Location:285581
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:298576
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:134172
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:176223
    F-box-like; F-box-like
    sd00039
    Location:301336
    7WD40; WD40 repeat [structural motif]
  8. XM_012966583.2XP_012822037.1  F-box/WD repeat-containing protein 1A isoform X5

    Related
    ENSXETP00000021018.1, ENSXETT00000005480.1
    Conserved Domains (5) summary
    COG2319
    Location:280576
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:293571
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:129167
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:171218
    F-box-like; F-box-like
    sd00039
    Location:296331
    7WD40; WD40 repeat [structural motif]
  9. XM_012966587.2XP_012822041.1  F-box/WD repeat-containing protein 1A isoform X7

    Related
    ENSXETP00000020978.1, ENSXETT00000011256.1
    Conserved Domains (5) summary
    COG2319
    Location:244540
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:257535
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:93131
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:135182
    F-box-like; F-box-like
    sd00039
    Location:260295
    7WD40; WD40 repeat [structural motif]
  10. XM_012966589.2XP_012822043.1  F-box/WD repeat-containing protein 1A isoform X9

    Related
    ENSXETP00000020881.1, ENSXETT00000005863.1
    Conserved Domains (5) summary
    COG2319
    Location:214510
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:227505
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:63101
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:105152
    F-box-like; F-box-like
    sd00039
    Location:230265
    7WD40; WD40 repeat [structural motif]
  11. XM_012966584.2XP_012822038.1  F-box/WD repeat-containing protein 1A isoform X6

    See identical proteins and their annotated locations for XP_012822038.1

    Conserved Domains (5) summary
    COG2319
    Location:249545
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:262540
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like; F-box-like
    sd00039
    Location:265300
    7WD40; WD40 repeat [structural motif]
  12. XM_012966586.2XP_012822040.1  F-box/WD repeat-containing protein 1A isoform X6

    See identical proteins and their annotated locations for XP_012822040.1

    Conserved Domains (5) summary
    COG2319
    Location:249545
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:262540
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like; F-box-like
    sd00039
    Location:265300
    7WD40; WD40 repeat [structural motif]
  13. XM_012966588.2XP_012822042.1  F-box/WD repeat-containing protein 1A isoform X8

    See identical proteins and their annotated locations for XP_012822042.1

    UniProtKB/TrEMBL
    Q28GV9
    Conserved Domains (5) summary
    COG2319
    Location:219515
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:232510
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:68106
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:110157
    F-box-like; F-box-like
    sd00039
    Location:235270
    7WD40; WD40 repeat [structural motif]
Support Center