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rnaseh2b ribonuclease H2 subunit B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549083, updated on 5-Mar-2024

Summary

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Official Symbol
rnaseh2bprovided by Xenbase
Official Full Name
ribonuclease H2 subunit Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-1004443
See related
Ensembl:ENSXETG00000020720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (149788608..149800625)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (146920335..146933407)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108645818 Neighboring gene deleted in lymphocytic leukemia, 7 Neighboring gene chromosome 2 C13orf42 homolog Neighboring gene family with sequence similarity 124 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in RNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within RNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonuclease H2 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
  
part_of ribonuclease H2 complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ribonuclease H2 subunit B
Names
RNase H2 subunit B
ribonuclease HI subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016329.2 → NP_001016329.1  ribonuclease H2 subunit B

    See identical proteins and their annotated locations for NP_001016329.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761427
    UniProtKB/Swiss-Prot
    Q0IIW0, Q28GD9
    UniProtKB/TrEMBL
    A0A803JXD0
    Related
    ENSXETP00000044770.4, ENSXETT00000044770.5
    Conserved Domains (1) summary
    cd09270
    Location:17 → 299
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    149788608..149800625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956951.3 → XP_012812405.1  ribonuclease H2 subunit B isoform X2

    UniProtKB/TrEMBL
    A0A6I8RBL4, A0A803JI86
    Related
    ENSXETP00000078259.2, ENSXETT00000077901.2
    Conserved Domains (1) summary
    cd09270
    Location:21 → 296
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  2. XM_031895970.1 → XP_031751830.1  ribonuclease H2 subunit B isoform X3

    UniProtKB/TrEMBL
    A0A803JI86, A0A8J1J496
    Conserved Domains (1) summary
    cd09270
    Location:30 → 279
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  3. XM_031895971.1 → XP_031751831.1  ribonuclease H2 subunit B isoform X4

    UniProtKB/TrEMBL
    A0A803JI86, A0A8J1J587
    Conserved Domains (1) summary
    cd09270
    Location:17 → 273
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  4. XM_012956950.3 → XP_012812404.1  ribonuclease H2 subunit B isoform X1

    UniProtKB/TrEMBL
    A0A803JXD0, A0A8J0SEI9
    Conserved Domains (1) summary
    cd09270
    Location:30 → 305
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28GD9.1 GenPept UniProtKB/Swiss-Prot:Q28GD9

Gene LinkOut

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