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id3 inhibitor of DNA binding 3, HLH protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549025, updated on 15-Nov-2019

Summary

Official Symbol
id3provided by Xenbase
Official Full Name
inhibitor of DNA binding 3, HLH proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-495261
See related
Ensembl:ENSXETG00000004664
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xIdx; xid3; id3-a; id3-b; xidia; heir-1

Genomic context

See id3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (52555474..52557540, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668233.1 (1347260..1349326, complement)

Chromosome 2 - NC_030678.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 18 Neighboring gene phosphatase and actin regulator 4 Neighboring gene methionine sulfoxide reductase A, gene 2 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2.1

Genomic regions, transcripts, and products

Pathways from BioSystems

  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General gene information

Homology

General protein information

Preferred Names
DNA-binding protein inhibitor ID-3
Names
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
inhibitor of differentiation 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016271.2NP_001016271.1  DNA-binding protein inhibitor ID-3

    See identical proteins and their annotated locations for NP_001016271.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761665
    UniProtKB/Swiss-Prot
    Q688C4
    Related
    ENSXETP00000003606.1, ENSXETT00000029345.1
    Conserved Domains (1) summary
    smart00353
    Location:4790
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030678.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    52555474..52557540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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