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SS1G_04900 similar to isocitrate lyase 1 [ Sclerotinia sclerotiorum 1980 UF-70 ]

Gene ID: 5489925, updated on 16-Nov-2023

Summary

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Gene symbol
SS1G_04900
Gene description
similar to isocitrate lyase 1
Locus tag
SS1G_04900
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Sclerotinia sclerotiorum 1980 UF-70 (strain: 1980)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia
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Genomic context

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Location:
chromosome: Unknown
Exon count:
3

NW_001820830.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001820830.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isocitrate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylisocitrate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in propionate catabolic process, 2-methylcitrate cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
similar to isocitrate lyase 1
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001820830.1 Reference assembly

    Range
    191370..193222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001593423.1 → XP_001593473.1  hypothetical protein SS1G_04900 [Sclerotinia sclerotiorum 1980 UF-70]

    See identical proteins and their annotated locations for XP_001593473.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1D9Q975, A7EHV8
    Conserved Domains (1) summary
    cl21457
    Location:65 → 549
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases