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tfdp1 transcription factor Dp-1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548888, updated on 31-Aug-2022

Summary

Official Symbol
tfdp1provided by Xenbase
Official Full Name
transcription factor Dp-1provided by Xenbase
Primary source
Xenbase:XB-GENE-1219073
See related
Ensembl:ENSXETG00000017776
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
dp1; dp-1; drtf1; tfdp1-a; tfdp1-b
Orthologs
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Genomic context

See tfdp1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (115815845..115843103, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (112259796..112284454, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene transmembrane and coiled-coil domains 3 Neighboring gene DCN1, defective in cullin neddylation 1, domain containing 2

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC107764

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011211.1NP_001011211.1  transcription factor Dp-1

    See identical proteins and their annotated locations for NP_001011211.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087763
    UniProtKB/TrEMBL
    F6T973, Q5M8Z8
    Related
    ENSXETP00000038552.5, ENSXETT00000038552.5
    Conserved Domains (3) summary
    cd14458
    Location:199245
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112194
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:201339
    DP; Transcription factor DP

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    115815845..115843103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895954.1XP_031751814.1  transcription factor Dp-1 isoform X1

    UniProtKB/TrEMBL
    F6T973
    Conserved Domains (3) summary
    cd14458
    Location:199245
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112194
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:201339
    DP; Transcription factor DP
  2. XM_031895955.1XP_031751815.1  transcription factor Dp-1 isoform X1

    UniProtKB/TrEMBL
    F6T973
    Conserved Domains (3) summary
    cd14458
    Location:199245
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112194
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:201339
    DP; Transcription factor DP