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TEX10 testis expressed 10 [ Homo sapiens (human) ]

Gene ID: 54881, updated on 3-May-2020

Summary

Official Symbol
TEX10provided by HGNC
Official Full Name
testis expressed 10provided by HGNC
Primary source
HGNC:HGNC:25988
See related
Ensembl:ENSG00000136891 MIM:616717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Ipi1; bA208F1.2
Expression
Broad expression in testis (RPKM 16.8), placenta (RPKM 10.7) and 25 other tissues See more
Orthologs

Genomic context

See TEX10 in Genome Data Viewer
Location:
9q31.1
Exon count:
16
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (100302075..100352942, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (103064357..103115856, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S2 pseudogene 35 Neighboring gene inversin Neighboring gene Nanog homeobox pseudogene 5 Neighboring gene uncharacterized LOC105376177 Neighboring gene MSANTD3-TMEFF1 readthrough Neighboring gene Myb/SANT DNA binding domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20287, FLJ31157, FLJ34350

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
rRNA processing TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
MLL1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
MLL1 complex IDA
Inferred from Direct Assay
more info
PubMed 
Rix1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
testis-expressed protein 10
Names
testis expressed gene 10
testis-expressed sequence 10 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001161584.1NP_001155056.1  testis-expressed protein 10 isoform 2

    See identical proteins and their annotated locations for NP_001155056.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences causes translation initiation at an alternate AUG and result in an isoform (2) that is shorter than isoform 1.
    Source sequence(s)
    AA436854, AK302619, BF981005
    Consensus CDS
    CCDS55330.1
    UniProtKB/Swiss-Prot
    Q9NXF1
    Related
    ENSP00000444555.1, ENST00000535814.5
    Conserved Domains (1) summary
    pfam12333
    Location:135238
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
  2. NM_017746.4NP_060216.2  testis-expressed protein 10 isoform 1

    See identical proteins and their annotated locations for NP_060216.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AA436854, AB060968, BC030652, BP336313
    Consensus CDS
    CCDS6748.1
    UniProtKB/Swiss-Prot
    Q9NXF1
    UniProtKB/TrEMBL
    A0A024R169
    Related
    ENSP00000364037.4, ENST00000374902.9
    Conserved Domains (1) summary
    pfam12333
    Location:132235
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    100302075..100352942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017014848.2XP_016870337.1  testis-expressed protein 10 isoform X2

  2. XM_011518798.2XP_011517100.1  testis-expressed protein 10 isoform X1

    Conserved Domains (1) summary
    pfam12333
    Location:132235
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation

RNA

  1. XR_929813.2 RNA Sequence

  2. XR_001746327.2 RNA Sequence

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