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PALMD palmdelphin [ Homo sapiens (human) ]

Gene ID: 54873, updated on 29-Mar-2020

Summary

Official Symbol
PALMDprovided by HGNC
Official Full Name
palmdelphinprovided by HGNC
Primary source
HGNC:HGNC:15846
See related
Ensembl:ENSG00000099260 MIM:610182
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PALML; C1orf11
Expression
Biased expression in fat (RPKM 87.9), heart (RPKM 29.7) and 13 other tissues See more
Orthologs

Genomic context

See PALMD in Genome Data Viewer
Location:
1p21.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (99646113..99694535)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (100111431..100160097)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene UPF0587 protein C1orf123 homolog pseudogene Neighboring gene long intergenic non-protein coding RNA 1708 Neighboring gene high mobility group box 3 pseudogene 10 Neighboring gene ferric chelate reductase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20271

Gene Ontology Provided by GOA

Process Evidence Code Pubs
regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dendritic spine IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
palmdelphin
Names
paralemmin-like protein
paralemnin-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017734.5NP_060204.1  palmdelphin

    See identical proteins and their annotated locations for NP_060204.1

    Status: VALIDATED

    Source sequence(s)
    AF262379, AL390970
    Consensus CDS
    CCDS758.1
    UniProtKB/Swiss-Prot
    Q9NP74
    UniProtKB/TrEMBL
    A0A0S2Z5E7
    Related
    ENSP00000263174.4, ENST00000263174.9
    Conserved Domains (1) summary
    pfam03285
    Location:78447
    Paralemmin; Paralemmin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    99646113..99694535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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