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TENT5C terminal nucleotidyltransferase 5C [ Homo sapiens (human) ]

Gene ID: 54855, updated on 4-May-2020

Summary

Official Symbol
TENT5Cprovided by HGNC
Official Full Name
terminal nucleotidyltransferase 5Cprovided by HGNC
Primary source
HGNC:HGNC:24712
See related
Ensembl:ENSG00000183508 MIM:613952
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM46C
Expression
Broad expression in bone marrow (RPKM 37.0), testis (RPKM 24.1) and 20 other tissues See more
Orthologs

Genomic context

See TENT5C in Genome Data Viewer
Location:
1p12
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (117606048..117628389)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (118148604..118171011)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene VPS25 pseudogene 1 Neighboring gene uncharacterized LOC100996263 Neighboring gene VDAC2 pseudogene 3 Neighboring gene anaphase promoting complex subunit 13 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: WDR3

Homology

Clone Names

  • FLJ20202

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA adenylyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA adenylyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
in utero embryonic development IEA
Inferred from Electronic Annotation
more info
 
mRNA stabilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA stabilization IDA
Inferred from Direct Assay
more info
PubMed 
viral process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
terminal nucleotidyltransferase 5C
Names
family with sequence similarity 46 member C
non-canonical poly(A) polymerase FAM46C
protein FAM46C
putative nucleotidyltransferase FAM46C
NP_060179.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017709.4NP_060179.2  terminal nucleotidyltransferase 5C

    See identical proteins and their annotated locations for NP_060179.2

    Status: VALIDATED

    Source sequence(s)
    AL365331, BC036516, CD300120
    Consensus CDS
    CCDS896.1
    UniProtKB/Swiss-Prot
    Q5VWP2
    Related
    ENSP00000358458.3, ENST00000369448.4
    Conserved Domains (1) summary
    pfam07984
    Location:17334
    NTP_transf_7; Nucleotidyltransferase

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    117606048..117628389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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