Format

Send to:

Choose Destination

nfil3 nuclear factor, interleukin 3 regulated [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548427, updated on 15-Nov-2019

Summary

Official Symbol
nfil3provided by Xenbase
Official Full Name
nuclear factor, interleukin 3 regulatedprovided by Xenbase
Primary source
Xenbase:XB-GENE-479624
See related
Ensembl:ENSXETG00000012589
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
e4bp4; il3bp1; nfil3a; nf-il3a
Orthologs

Genomic context

See nfil3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (126553131..126572421, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (86926172..86945561)

Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene spleen tyrosine kinase Neighboring gene AU RNA binding protein/enoyl-CoA hydratase Neighboring gene receptor tyrosine kinase like orphan receptor 2 Neighboring gene serine palmitoyltransferase, long chain base subunit 1

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC107826

General protein information

Preferred Names
nuclear factor interleukin-3-regulated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015710.1NP_001015710.1  nuclear factor interleukin-3-regulated protein

    See identical proteins and their annotated locations for NP_001015710.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089641
    UniProtKB/Swiss-Prot
    Q5FW38
    Related
    ENSXETP00000038058.1, ENSXETT00000027796.1
    Conserved Domains (2) summary
    cd14694
    Location:72131
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
    pfam06529
    Location:130461
    Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    126553131..126572421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961583.2XP_012817037.1  nuclear factor interleukin-3-regulated protein isoform X1

    See identical proteins and their annotated locations for XP_012817037.1

    UniProtKB/Swiss-Prot
    Q5FW38
    Conserved Domains (2) summary
    cd14694
    Location:72131
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
    pfam06529
    Location:130461
    Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor
  2. XM_012961589.2XP_012817043.1  nuclear factor interleukin-3-regulated protein isoform X1

    See identical proteins and their annotated locations for XP_012817043.1

    UniProtKB/Swiss-Prot
    Q5FW38
    Conserved Domains (2) summary
    cd14694
    Location:72131
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
    pfam06529
    Location:130461
    Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor
Support Center