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PVX_084505 3',5'-cyclic-nucleotide phosphodiesterase, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5475876, updated on 5-Sep-2024

Summary

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Gene symbol
PVX_084505
Gene description
3',5'-cyclic-nucleotide phosphodiesterase, putative
Locus tag
PVX_084505
See related
PlasmoDB:PVX_084505; VEuPathDB:PVX_084505
Gene type
protein coding
RNA name
3',5'-cyclic-nucleotide phosphodiesterase, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
Orthologs
Plasmodium falciparum all
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Genomic context

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See PVX_084505 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Sequence:
Chromosome: 13; NC_009918.1 (375676..379127)

Chromosome 13 - NC_009918.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein, conserved Neighboring gene WD domain, G-beta repeat domain containing protein Neighboring gene porphobilinogen deaminase, putative Neighboring gene hypothetical protein, conserved

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009918.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Repeated regions

  • Loc: 377597-377626 rpt_type = tandem , rpt_unit_seq = a , satellite = microsatellite
  • Loc: 378012-378138 rpt_type = tandem , rpt_unit_seq = ccta , satellite = microsatellite

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3',5'-cyclic-nucleotide phosphodiesterase, putative
XP_001616568.1
  • encoded by transcript PVX_084505A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009918.1 Reference assembly

    Range
    375676..379127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001616518.1 → XP_001616568.1  3',5'-cyclic-nucleotide phosphodiesterase, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001616568.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9SNM3, A0A0J9TS52, A5K0J4
    Conserved Domains (1) summary
    pfam00233
    Location:726 → 949
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
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