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MAN1 mannosyl-oligosaccharide 1,2-alpha-mannosidase [ Glycine max (soybean) ]

Gene ID: 547540, updated on 7-Dec-2023

Summary

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Gene symbol
MAN1
Gene description
mannosyl-oligosaccharide 1,2-alpha-mannosidase
Locus tag
GLYMA_08G221900v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (18089937..18096671)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (18013852..18020579)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene KH domain-containing protein HEN4 Neighboring gene GATA transcription factor 28 Neighboring gene metal tolerance protein C4-like Neighboring gene 60S ribosomal protein L7-4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Stop-and-go movements of plant Golgi stacks are mediated by the acto-myosin system. Nebenführ A, et al. Plant Physiol, 1999 Dec. PMID 10594100, Free PMC Article
  2. Soybean endo-β-mannanase GmMAN1 is not associated with leaf abscission, but might be involved in the response to wounding. Yan M, et al. PLoS One, 2012. PMID 23173047, Free PMC Article
  3. Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. Umezawa T, et al. DNA Res, 2008 Dec. PMID 18927222, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannosyl-oligosaccharide 1,2-alpha-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251128.2 → NP_001238057.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase

    See identical proteins and their annotated locations for NP_001238057.1

    Status: VALIDATED

    Source sequence(s)
    AF126550, DB963405
    UniProtKB/TrEMBL
    Q9SEH8
    Conserved Domains (1) summary
    pfam01532
    Location:115 → 547
    Glyco_hydro_47; Glycosyl hydrolase family 47

  2. NM_001401201.1 → NP_001388130.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase

    Status: VALIDATED

    Source sequence(s)
    AF126550, FK619501
    UniProtKB/TrEMBL
    Q9SEH8

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    18089937..18096671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041017661.1 → XP_040873595.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1

    Conserved Domains (1) summary
    cl04955
    Location:101 → 592
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  2. XM_041017662.1 → XP_040873596.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1

    Conserved Domains (1) summary
    cl04955
    Location:101 → 592
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  3. XM_006584570.4 → XP_006584633.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X2

    UniProtKB/TrEMBL
    Q9SEH8
    Conserved Domains (1) summary
    pfam01532
    Location:115 → 547
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
Heading Accession and Version

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