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RAB39A RAB39A, member RAS oncogene family [ Homo sapiens (human) ]

Gene ID: 54734, updated on 23-Nov-2021

Summary

Official Symbol
RAB39Aprovided by HGNC
Official Full Name
RAB39A, member RAS oncogene familyprovided by HGNC
Primary source
HGNC:HGNC:16521
See related
Ensembl:ENSG00000179331 MIM:619558
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
K28; RAB39
Expression
Broad expression in brain (RPKM 2.3), appendix (RPKM 1.8) and 16 other tissues See more
Orthologs
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Genomic context

See RAB39A in Genome Data Viewer
Location:
11q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (107928448..107963482)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (107799174..107834208)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F2 Neighboring gene ribosomal protein lateral stalk subunit P2 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 4319 Neighboring gene cullin 5 Neighboring gene acetyl-CoA acetyltransferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTP binding NAS
Non-traceable Author Statement
more info
PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 
involved_in phagosome acidification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phagosome-lysosome fusion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane TAS
Traceable Author Statement
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in phagocytic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ras-related protein Rab-39A
Names
RAB39, member RAS oncogene family
rab-39
rab-related GTP-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017516.3NP_059986.1  ras-related protein Rab-39A

    See identical proteins and their annotated locations for NP_059986.1

    Status: VALIDATED

    Source sequence(s)
    AK292969, AP001024, AP003307, BC028064, HY107079
    Consensus CDS
    CCDS8338.1
    UniProtKB/Swiss-Prot
    Q14964
    Related
    ENSP00000322594.2, ENST00000320578.3
    Conserved Domains (1) summary
    cd04111
    Location:7217
    Rab39; Rab GTPase family 39 (Rab39)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    107928448..107963482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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