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PVX_100880 sphingomyelin phosphodiesterase, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5473203, updated on 5-Sep-2024

Summary

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Gene symbol
PVX_100880
Gene description
sphingomyelin phosphodiesterase, putative
Locus tag
PVX_100880
See related
PlasmoDB:PVX_100880; VEuPathDB:PVX_100880
Gene type
protein coding
RNA name
sphingomyelin phosphodiesterase, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
Orthologs
Plasmodium falciparum all
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Genomic context

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See PVX_100880 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
1
Sequence:
Chromosome: 14; NC_009919.1 (2444708..2446969, complement)

Chromosome 14 - NC_009919.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene K+ channel tetramerisation domain containing protein Neighboring gene long-chain-fatty-acid--CoA ligase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009919.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase, putative
XP_001613922.1
  • encoded by transcript PVX_100880A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009919.1 Reference assembly

    Range
    2444708..2446969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001613872.1 → XP_001613922.1  sphingomyelin phosphodiesterase, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001613922.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9S3U3, A0A0J9W7W1, A0A1G4H5K1, A0A565A567, A5K8P9
    Conserved Domains (2) summary
    PHA03307
    Location:86 → 436
    PHA03307; transcriptional regulator ICP4; Provisional
    cl00490
    Location:495 → 717
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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