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MED1 mediator complex subunit 1 [ Homo sapiens (human) ]

Gene ID: 5469, updated on 16-Feb-2020

Summary

Official Symbol
MED1provided by HGNC
Official Full Name
mediator complex subunit 1provided by HGNC
Primary source
HGNC:HGNC:9234
See related
Ensembl:ENSG00000125686 MIM:604311
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PBP; CRSP1; RB18A; TRIP2; PPARBP; CRSP200; DRIP205; DRIP230; PPARGBP; TRAP220
Summary
The activation of gene transcription is a multistep process that is triggered by factors that recognize transcriptional enhancer sites in DNA. These factors work with co-activators to direct transcriptional initiation by the RNA polymerase II apparatus. The protein encoded by this gene is a subunit of the CRSP (cofactor required for SP1 activation) complex, which, along with TFIID, is required for efficient activation by SP1. This protein is also a component of other multisubunit complexes e.g. thyroid hormone receptor-(TR-) associated proteins which interact with TR and facilitate TR function on DNA templates in conjunction with initiation factors and cofactors. It also regulates p53-dependent apoptosis and it is essential for adipogenesis. This protein is known to have the ability to self-oligomerize. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in lymph node (RPKM 8.1), appendix (RPKM 7.7) and 25 other tissues See more
Orthologs

Genomic context

See MED1 in Genome Data Viewer
Location:
17q12
Exon count:
17
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (39404285..39451281, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37560538..37607527, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene transcription factor CP2-like Neighboring gene F-box and leucine rich repeat protein 20 Neighboring gene microRNA 548BC Neighboring gene cyclin dependent kinase 12 Neighboring gene RNA, U6 small nuclear 233, pseudogene Neighboring gene uncharacterized LOC105371770

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genetics of rheumatoid arthritis contributes to biology and drug discovery.
NHGRI GWA Catalog
GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.
NHGRI GWA Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
matrix gag HIV-1 MA upregulates MED1 mRNA expression in HepG2 cells PubMed
gag HIV-1 MA upregulates MED1 gene expression in HepG2 cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC71488

Gene Ontology Provided by GOA

Function Evidence Code Pubs
LBD domain binding IPI
Inferred from Physical Interaction
more info
PubMed 
RNA polymerase II core promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 
chromatin binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
estrogen receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
mediator complex binding IDA
Inferred from Direct Assay
more info
PubMed 
nuclear hormone receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
nuclear receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
nuclear receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
nuclear receptor transcription coactivator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
nuclear receptor transcription coactivator activity NAS
Non-traceable Author Statement
more info
PubMed 
peroxisome proliferator activated receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
retinoic acid receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
retinoic acid receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
thyroid hormone receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
thyroid hormone receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
thyroid hormone receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
thyroid hormone receptor coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
thyroid hormone receptor coactivator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
transcription coactivator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription coregulator activity IDA
Inferred from Direct Assay
more info
PubMed 
transcription corepressor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 
vitamin D receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vitamin D receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
vitamin D receptor binding NAS
Non-traceable Author Statement
more info
PubMed 
vitamin D receptor binding TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
ERK1 and ERK2 cascade IDA
Inferred from Direct Assay
more info
PubMed 
androgen biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
angiogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
animal organ regeneration IEA
Inferred from Electronic Annotation
more info
 
brain development IEA
Inferred from Electronic Annotation
more info
 
cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to epidermal growth factor stimulus IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to hepatocyte growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
cellular response to steroid hormone stimulus IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to thyroid hormone stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to thyroid hormone stimulus IDA
Inferred from Direct Assay
more info
PubMed 
embryonic heart tube development IEA
Inferred from Electronic Annotation
more info
 
embryonic hemopoiesis IEA
Inferred from Electronic Annotation
more info
 
embryonic hindlimb morphogenesis IEA
Inferred from Electronic Annotation
more info
 
embryonic placenta development IEA
Inferred from Electronic Annotation
more info
 
enucleate erythrocyte development IEA
Inferred from Electronic Annotation
more info
 
epithelial cell proliferation involved in mammary gland duct elongation IEA
Inferred from Electronic Annotation
more info
 
erythrocyte development ISS
Inferred from Sequence or Structural Similarity
more info
 
fat cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
intracellular steroid hormone receptor signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
keratinocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
lactation IEA
Inferred from Electronic Annotation
more info
 
lens development in camera-type eye ISS
Inferred from Sequence or Structural Similarity
more info
 
liver development IEA
Inferred from Electronic Annotation
more info
 
mRNA transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
mammary gland branching involved in pregnancy IEA
Inferred from Electronic Annotation
more info
 
mammary gland branching involved in thelarche IEA
Inferred from Electronic Annotation
more info
 
megakaryocyte development ISS
Inferred from Sequence or Structural Similarity
more info
 
monocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of keratinocyte proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of neuron differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
peroxisome proliferator activated receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of G0 to G1 transition IEA
Inferred from Electronic Annotation
more info
 
positive regulation of erythrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of hepatocyte proliferation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of interferon-gamma-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of intracellular estrogen receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of keratinocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of signaling receptor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 
protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
regulation of RNA biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell cycle NAS
Non-traceable Author Statement
more info
PubMed 
regulation of lipid metabolic process TAS
Traceable Author Statement
more info
 
regulation of transcription by RNA polymerase I IDA
Inferred from Direct Assay
more info
PubMed 
regulation of vitamin D receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
retinal pigment epithelium development IEA
Inferred from Electronic Annotation
more info
 
thyroid hormone generation IEA
Inferred from Electronic Annotation
more info
 
thyroid hormone mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription initiation from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
transcription initiation from RNA polymerase II promoter TAS
Traceable Author Statement
more info
 
ventricular trabecula myocardium morphogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromatin IEA
Inferred from Electronic Annotation
more info
 
mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mediator complex IDA
Inferred from Direct Assay
more info
PubMed 
mediator complex IMP
Inferred from Mutant Phenotype
more info
PubMed 
membrane HDA PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
protein-DNA complex IEA
Inferred from Electronic Annotation
more info
 
ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mediator of RNA polymerase II transcription subunit 1
Names
ARC205
PPAR-binding protein
PPARG binding protein
TR-interacting protein 2
TRIP-2
activator-recruited cofactor 205 kDa component
p53 regulatory protein RB18A
peroxisome proliferator-activated receptor-binding protein
thyroid hormone receptor-associated protein complex 220 kDa component
thyroid hormone receptor-associated protein complex component TRAP220
thyroid receptor interacting protein 2
vitamin D receptor-interacting protein 230 kD
vitamin D receptor-interacting protein complex component DRIP205

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046996.1 RefSeqGene

    Range
    5018..51996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_004774.4NP_004765.2  mediator of RNA polymerase II transcription subunit 1

    See identical proteins and their annotated locations for NP_004765.2

    Status: REVIEWED

    Source sequence(s)
    AC005288, BC131783, BP357374
    Consensus CDS
    CCDS11336.1
    UniProtKB/Swiss-Prot
    Q15648
    Related
    ENSP00000300651.6, ENST00000300651.11
    Conserved Domains (1) summary
    pfam10744
    Location:60426
    Med1; Mediator of RNA polymerase II transcription subunit 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    39404285..39451281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005257465.3XP_005257522.1  mediator of RNA polymerase II transcription subunit 1 isoform X1

    Conserved Domains (2) summary
    pfam04637
    Location:816880
    Herpes_pp85; Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
    pfam10744
    Location:1254
    Med1; Mediator of RNA polymerase II transcription subunit 1
  2. XM_006721957.2XP_006722020.1  mediator of RNA polymerase II transcription subunit 1 isoform X3

    Related
    ENSP00000377828.3, ENST00000394287.7
    Conserved Domains (1) summary
    pfam10744
    Location:60426
    Med1; Mediator of RNA polymerase II transcription subunit 1
  3. XM_017024779.2XP_016880268.1  mediator of RNA polymerase II transcription subunit 1 isoform X2

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