U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PCDHB18P protocadherin beta 18 pseudogene [ Homo sapiens (human) ]

Gene ID: 54660, updated on 22-Sep-2022

Summary

Official Symbol
PCDHB18Pprovided by HGNC
Official Full Name
protocadherin beta 18 pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:14548
See related
Ensembl:ENSG00000146001 AllianceGenome:HGNC:14548
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCDHB18; PCDH-psi2
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See PCDHB18P in Genome Data Viewer
Location:
5q31.3
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (141234333..141237529)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (141759647..141762840)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (140613905..140617101)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene protocadherin beta cluster Neighboring gene protocadherin beta 13 Neighboring gene protocadherin beta 14 Neighboring gene protocadherin beta 19 pseudogene Neighboring gene protocadherin beta 15

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • protocadherin beta pseudogene

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000017.2 

    Range
    202458..205654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_001281.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244517, AK095496, DA121078
    Related
    ENST00000526308.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    141234333..141237529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791778.1 Reference GRCh38.p14 PATCHES

    Range
    469509..472705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    141759647..141762840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)