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Wdr72 WD repeat domain 72 [ Mus musculus (house mouse) ]

Gene ID: 546144, updated on 25-May-2017
Official Symbol
Wdr72provided by MGI
Official Full Name
WD repeat domain 72provided by MGI
Primary source
MGI:MGI:3583957
See related
Ensembl:ENSMUSG00000044976 Vega:OTTMUSG00000023578
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW558070; D230040E23
Orthologs
Location:
9; 9 D
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (74110331..74283203)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (73958141..74131010)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene unc-13 homolog C (C. elegans) Neighboring gene predicted gene, 33407 Neighboring gene nuclear receptor subfamily 1, group H, member 2, pseudogene Neighboring gene predicted gene, 33459

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Markers

Homology

Clone Names

  • MGC175843, MGC175845

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biomineral tissue development IEA
Inferred from Electronic Annotation
more info
 
enamel mineralization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
endosome IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
WD repeat-containing protein 72

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033500.3NP_001028672.2  WD repeat-containing protein 72

    See identical proteins and their annotated locations for NP_001028672.2

    Status: VALIDATED

    Source sequence(s)
    AC108944, AI843505, AK142559, BB658361, BG088608
    Consensus CDS
    CCDS23338.2
    UniProtKB/Swiss-Prot
    D3YYM4
    Related
    ENSMUSP00000057320.7, OTTMUSP00000027763, ENSMUST00000055879.8, OTTMUST00000057548
    Conserved Domains (3) summary
    COG2319
    Location:348607
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:418606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    74110331..74283203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511283.2XP_006511346.1  WD repeat-containing protein 72 isoform X5

    Conserved Domains (3) summary
    COG2319
    Location:348719
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:418606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_006511281.2XP_006511344.1  WD repeat-containing protein 72 isoform X3

    UniProtKB/TrEMBL
    A0A1L1SR77
    Related
    ENSMUSP00000149349.1, OTTMUSP00000080012, ENSMUST00000215440.1, OTTMUST00000154849
    Conserved Domains (3) summary
    COG2319
    Location:336595
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:406594
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  3. XM_006511280.2XP_006511343.1  WD repeat-containing protein 72 isoform X2

    Conserved Domains (3) summary
    COG2319
    Location:347606
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:417605
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. XM_006511282.2XP_006511345.1  WD repeat-containing protein 72 isoform X4

    Conserved Domains (3) summary
    COG2319
    Location:335594
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:405593
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  5. XM_006511279.2XP_006511342.1  WD repeat-containing protein 72 isoform X1

    See identical proteins and their annotated locations for XP_006511342.1

    UniProtKB/Swiss-Prot
    D3YYM4
    Conserved Domains (3) summary
    COG2319
    Location:348607
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:2060
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:418606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177908.2: Suppressed sequence

    Description
    NM_177908.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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