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Shisal2a shisa like 2A [ Mus musculus (house mouse) ]

Gene ID: 545667, updated on 26-Sep-2022

Summary

Official Symbol
Shisal2aprovided by MGI
Official Full Name
shisa like 2Aprovided by MGI
Primary source
MGI:MGI:3651644
See related
Ensembl:ENSMUSG00000059816 AllianceGenome:MGI:3651644
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam159a
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISAL2A (shisa like 2A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary adult (RPKM 3.0), adrenal adult (RPKM 2.9) and 10 other tissues See more
Orthologs
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Genomic context

See Shisal2a in Genome Data Viewer
Location:
4 C7; 4
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (108224963..108243980, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (108367766..108386783, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46889 Neighboring gene predicted gene, 54250 Neighboring gene VISTA enhancer mm1490 Neighboring gene predicted gene, 32297 Neighboring gene glutathione peroxidase 7 Neighboring gene predicted gene, 40223 Neighboring gene ribosomal protein L9 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein shisa-like-2A
Names
family with sequence similarity 159, member A
membrane protein FAM159A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099303.2NP_001092773.1  protein shisa-like-2A

    See identical proteins and their annotated locations for NP_001092773.1

    Status: VALIDATED

    Source sequence(s)
    AL627238
    Consensus CDS
    CCDS38833.1
    UniProtKB/Swiss-Prot
    A2A9G7
    Related
    ENSMUSP00000060463.7, ENSMUST00000053157.7

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    108224963..108243980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320324.2XP_017175813.1  protein shisa-like-2A isoform X1

    Conserved Domains (1) summary
    PRK12323
    Location:64146
    PRK12323; DNA polymerase III subunit gamma/tau
  2. XM_017320325.2XP_017175814.1  protein shisa-like-2A isoform X1

    Conserved Domains (1) summary
    PRK12323
    Location:64146
    PRK12323; DNA polymerase III subunit gamma/tau

RNA

  1. XR_003954986.1 RNA Sequence

  2. XR_001784163.2 RNA Sequence