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C11orf71 chromosome 11 open reading frame 71 [ Homo sapiens (human) ]

Gene ID: 54494, updated on 11-Sep-2019

Summary

Official Symbol
C11orf71provided by HGNC
Official Full Name
chromosome 11 open reading frame 71provided by HGNC
Primary source
HGNC:HGNC:25937
See related
Ensembl:ENSG00000180425
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
URLC7
Expression
Broad expression in testis (RPKM 41.5), kidney (RPKM 6.0) and 18 other tissues See more
Orthologs

Genomic context

See C11orf71 in Genome Data Viewer
Location:
11q23.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (114391443..114400511, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (114262170..114271272, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene nicotinamide N-methyltransferase Neighboring gene uncharacterized LOC101928940 Neighboring gene uncharacterized LOC107984391 Neighboring gene RNA binding motif protein 7 Neighboring gene RNA exonuclease 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20010

General protein information

Preferred Names
uncharacterized protein C11orf71
Names
up-regulated in lung cancer 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271562.2NP_001258491.1  uncharacterized protein C11orf71 isoform 1

    See identical proteins and their annotated locations for NP_001258491.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter isoform (1).
    Source sequence(s)
    AK000017, AP002373, HY013971
    Consensus CDS
    CCDS76479.1
    UniProtKB/Swiss-Prot
    Q6IPW1
    UniProtKB/TrEMBL
    A0A0A8K8C2
    Related
    ENSP00000492536.1, ENST00000623205.2
    Conserved Domains (1) summary
    pfam15747
    Location:1112
    DUF4687; Domain of unknown function (DUF4687)
  2. NM_019021.4NP_061894.2  uncharacterized protein C11orf71 isoform 2

    See identical proteins and their annotated locations for NP_061894.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon structure in the 3' coding region, and differs in the 3' UTR, compared to variant 1. The encoded isoform (2) is longer and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AP002373, BC071695, HY013971
    Consensus CDS
    CCDS8369.2
    UniProtKB/Swiss-Prot
    Q6IPW1
    Related
    ENSP00000325508.4, ENST00000325636.8
    Conserved Domains (1) summary
    pfam15747
    Location:1112
    DUF4687; Domain of unknown function (DUF4687)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    114391443..114400511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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