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1190007I07Rik RIKEN cDNA 1190007I07 gene [ Mus musculus (house mouse) ]

Gene ID: 544717, updated on 22-Nov-2020

Summary

Official Symbol
1190007I07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1190007I07 geneprovided by MGI
Primary source
MGI:MGI:3698433
See related
Ensembl:ENSMUSG00000063320
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Brawnin
Expression
Ubiquitous expression in adrenal adult (RPKM 22.0), duodenum adult (RPKM 15.4) and 28 other tissues See more
Orthologs
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Genomic context

See 1190007I07Rik in Genome Data Viewer
Location:
10; 10 C1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (82455685..82459062, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (82619851..82623228, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (82082596..82085973, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene required for meiotic nuclear division 5 homolog A pseudogene Neighboring gene adaptor-related protein complex 3, mu 1 subunit, pseudogene Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene host cell factor C2 Neighboring gene nuclear transcription factor-Y beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
mitochondrial respiratory chain complex III assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial respiratory chain complex III assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial respiratory chain complex III assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein BRAWNIN
Names
uncharacterized protein C12orf73 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135567.1NP_001129039.1  protein BRAWNIN precursor

    See identical proteins and their annotated locations for NP_001129039.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AC152980, AK004515
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000078593.4, ENSMUST00000079648.11
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)
  2. NM_001135568.1NP_001129040.1  protein BRAWNIN precursor

    See identical proteins and their annotated locations for NP_001129040.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the 5' UTR, compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC152980, DV649038
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000139234.1, ENSMUST00000183363.1
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)
  3. NM_001135569.1NP_001129041.1  protein BRAWNIN precursor

    See identical proteins and their annotated locations for NP_001129041.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate splice site in the 5' UTR, compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC152980
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000139244.1, ENSMUST00000185168.7
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    82455685..82459062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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