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1190007I07Rik RIKEN cDNA 1190007I07 gene [ Mus musculus (house mouse) ]

Gene ID: 544717, updated on 31-Jan-2019

Summary

Official Symbol
1190007I07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1190007I07 geneprovided by MGI
Primary source
MGI:MGI:3698433
See related
Ensembl:ENSMUSG00000063320
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in adrenal adult (RPKM 22.0), duodenum adult (RPKM 15.4) and 28 other tissues See more
Orthologs

Genomic context

See 1190007I07Rik in Genome Data Viewer
Location:
10; 10 C1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (82619851..82623228, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (82082596..82085973, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene adaptor-related protein complex 3, mu 1 subunit, pseudogene Neighboring gene predicted gene, 40721 Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene host cell factor C2 Neighboring gene nuclear transcription factor-Y beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C12orf73 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135567.1NP_001129039.1  uncharacterized protein C12orf73 homolog precursor

    See identical proteins and their annotated locations for NP_001129039.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    AC152980, AK004515
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000078593.4, ENSMUST00000079648.11
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)
  2. NM_001135568.1NP_001129040.1  uncharacterized protein C12orf73 homolog precursor

    See identical proteins and their annotated locations for NP_001129040.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the 5' UTR, compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC152980, DV649038
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000139234.1, ENSMUST00000183363.1
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)
  3. NM_001135569.1NP_001129041.1  uncharacterized protein C12orf73 homolog precursor

    See identical proteins and their annotated locations for NP_001129041.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate splice site in the 5' UTR, compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC152980
    Consensus CDS
    CCDS48653.1
    UniProtKB/Swiss-Prot
    Q8BTC1
    Related
    ENSMUSP00000139244.1, ENSMUST00000185168.7
    Conserved Domains (1) summary
    pfam14990
    Location:244
    DUF4516; Domain of unknown function (DUF4516)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    82619851..82623228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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