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STAG3L1 stromal antigen 3-like 1 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 54441, updated on 13-Mar-2020

Summary

Official Symbol
STAG3L1provided by HGNC
Official Full Name
stromal antigen 3-like 1 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:33852
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
STAG3L2; STAG3L3; STAG3L1P
Expression
Broad expression in testis (RPKM 34.2), spleen (RPKM 14.7) and 24 other tissues See more

Genomic context

See STAG3L1 in Genome Data Viewer
Location:
7q11.23
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (75359200..75367809)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (74988447..74997085)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 10 Neighboring gene speedy/RINGO cell cycle regulator family member E15 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 2 Neighboring gene FKBP prolyl isomerase 6 pseudogene Neighboring gene tripartite motif containing 73

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • STAG3-like protein 1

Clone Names

  • FLJ78546, MGC40269, MGC131759, DKFZp434A0131

Gene Ontology Provided by GOA

Function Evidence Code Pubs
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
sister chromatid cohesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cohesin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040583.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC211486, AK289466, BC119762, DC419304

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    75359200..75367809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001002840.1: Suppressed sequence

    Description
    NM_001002840.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_018991.2: Suppressed sequence

    Description
    NM_018991.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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