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SODCP.2 superoxide dismutase [Cu-Zn], chloroplastic [ Solanum lycopersicum (tomato) ]

Gene ID: 543981, updated on 5-Sep-2025
Gene symbol
SODCP.2
Gene description
superoxide dismutase [Cu-Zn], chloroplastic
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
Cu/ZnSOD2
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See SODCP.2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 11 NC_090810.1 (57564163..57569864)
103 previous assembly SL3.0 (GCF_000188115.4) 11 NC_015448.3 (52456999..52462697)

Chromosome 11 - NC_090810.1Genomic Context describing neighboring genes Neighboring gene DNA ligase 1 Neighboring gene protein SOSEKI 3 Neighboring gene zinc finger protein ZAT5 Neighboring gene large ribosomal subunit protein bL9c

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The tomato gene for the chloroplastic Cu,Zn superoxide dismutase: regulation of expression imposed in transgenic tobacco plants by a short promoter. Kardish N, et al. Plant Mol Biol, 1994 Aug. PMID 8075404
  2. Isolation of two cDNA clones from tomato containing two different superoxide dismutase sequences. Perl-Treves R, et al. Plant Mol Biol, 1988 Sep. PMID 24272495
  3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
superoxide dismutase [Cu-Zn], chloroplastic
Names
copper zinc superoxide dismutase 2
superoxidase dismutase
superoxide dismutase (SOD)
NP_001234769.2

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247840.2 → NP_001234769.2  superoxide dismutase [Cu-Zn], chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AEKE03003147, BT012694
    UniProtKB/Swiss-Prot
    P14831
    UniProtKB/TrEMBL
    Q7XAV2
    Conserved Domains (1) summary
    cl00891
    Location:67 → 214
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090810.1 Reference SLM_r2.1 Primary Assembly

    Range
    57564163..57569864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P14831.1 GenPept UniProtKB/Swiss-Prot:P14831

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases