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TM29 developmental protein SEPALLATA 1-like [ Solanum lycopersicum (tomato) ]

Gene ID: 543770, updated on 9-Nov-2023

Summary

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Gene symbol
TM29
Gene description
developmental protein SEPALLATA 1-like
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
LeSEP1; SlTM29
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (51712279..51716842)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (51075037..51079608)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 Neighboring gene myb-related protein 305 Neighboring gene MADS-box protein MBP20 Neighboring gene ultraviolet-B receptor UVR8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Ampomah-Dwamena C, et al. Plant Physiol, 2002 Oct. PMID 12376628, Free PMC Article
  2. A non-climacteric fruit gene CaMADS-RIN regulates fruit ripening and ethylene biosynthesis in climacteric fruit. Dong T, et al. PLoS One, 2014. PMID 24751940, Free PMC Article
  3. Duplication and diversification in the APETALA1/FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development. Litt A, et al. Genetics, 2003 Oct. PMID 14573491, Free PMC Article
  4. MADS-box genes expressed during tomato seed and fruit development. Busi MV, et al. Plant Mol Biol, 2003 Jul. PMID 13677468
  5. The Interaction between DELLA and ARF/IAA Mediates Crosstalk between Gibberellin and Auxin Signaling to Control Fruit Initiation in Tomato. Hu J, et al. Plant Cell, 2018 Aug. PMID 30008445, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box protein; developmental protein SEPALLATA 1-like
Names
SEPALLATA1-like MADS-box
TAGL2 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246982.2 → NP_001233911.1  developmental protein SEPALLATA 1-like

    See identical proteins and their annotated locations for NP_001233911.1

    Status: VALIDATED

    Source sequence(s)
    AK328193, BG628913
    UniProtKB/TrEMBL
    Q8H278, Q8VXG0
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:85 → 171
    K-box; K-box region

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    51712279..51716842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010317567.3 → XP_010315869.1  MADS-box protein isoform X1

    UniProtKB/TrEMBL
    Q8H278
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:85 → 171
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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