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opr3 12-oxophytodienoate reductase 3 [ Solanum lycopersicum (tomato) ]

Gene ID: 543763, updated on 1-Nov-2024
Gene symbol
opr3
Gene description
12-oxophytodienoate reductase 3
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
LeOPR3; SlOPR3
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See opr3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 7 NC_090806.1 (4161266..4165632)
103 previous assembly SL3.0 (GCF_000188115.4) 7 NC_015444.3 (2549471..2553837)

Chromosome 7 - NC_090806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101259453 Neighboring gene 36.4 kDa proline-rich protein-like Neighboring gene large ribosomal subunit protein P2A-like Neighboring gene uncharacterized LOC101266237

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Structural basis of substrate specificity of plant 12-oxophytodienoate reductases. Breithaupt C, et al. J Mol Biol, 2009 Oct 9. PMID 19660473
  2. Crystal structure of 12-oxophytodienoate reductase 3 from tomato: self-inhibition by dimerization. Breithaupt C, et al. Proc Natl Acad Sci U S A, 2006 Sep 26. PMID 16983071, Free PMC Article
  3. Jasmonic acid facilitates flower opening and floral organ development through the upregulated expression of SlMYB21 transcription factor in tomato. Niwa T, et al. Biosci Biotechnol Biochem, 2018 Feb. PMID 29448919
  4. Characterization and cDNA-microarray expression analysis of 12-oxophytodienoate reductases reveals differential roles for octadecanoid biosynthesis in the local versus the systemic wound response. Strassner J, et al. Plant J, 2002 Nov. PMID 12445129
  5. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 12-oxophytodienoate reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in jasmonic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxylipin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
12-oxophytodienoate reductase 3
Names
12-oxophytodienoate-10,11-reductase 3
OPDA-reductase 3
NP_001233873.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246944.2 → NP_001233873.1  12-oxophytodienoate reductase 3

    See identical proteins and their annotated locations for NP_001233873.1

    Status: VALIDATED

    Source sequence(s)
    BT014368
    UniProtKB/Swiss-Prot
    Q9FEW9
    Conserved Domains (1) summary
    PLN02411
    Location:1 → 396
    PLN02411; 12-oxophytodienoate reductase

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090806.1 Reference SLM_r2.1 Primary Assembly

    Range
    4161266..4165632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FEW9.1 GenPept UniProtKB/Swiss-Prot:Q9FEW9

Gene LinkOut

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Molecular Biology Databases